miRNA display CGI


Results 121 - 140 of 198 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13995 5' -54.9 NC_003521.1 + 148762 0.69 0.917338
Target:  5'- cCCG-GUccGCCaucgcuacgggaGGCACCCCGGGGacccccGGACCc -3'
miRNA:   3'- -GGCaCA--CGG------------UCGUGGGGUUCU------UCUGG- -5'
13995 5' -54.9 NC_003521.1 + 148892 0.67 0.971034
Target:  5'- gCCGUG-GCCG--ACgCCGAGGAGcGCCg -3'
miRNA:   3'- -GGCACaCGGUcgUGgGGUUCUUC-UGG- -5'
13995 5' -54.9 NC_003521.1 + 148980 0.67 0.961842
Target:  5'- uCCGcGUGCUGGCGCgcaccuucacgCCCGuccAGAuccAGACCg -3'
miRNA:   3'- -GGCaCACGGUCGUG-----------GGGU---UCU---UCUGG- -5'
13995 5' -54.9 NC_003521.1 + 149430 0.66 0.978518
Target:  5'- -aGUGcUGUCuGCugCUCAAGucGGCCu -3'
miRNA:   3'- ggCAC-ACGGuCGugGGGUUCuuCUGG- -5'
13995 5' -54.9 NC_003521.1 + 149658 0.67 0.965105
Target:  5'- cCUG-GUGCgGGCugCCCGAcaucguGGGCCc -3'
miRNA:   3'- -GGCaCACGgUCGugGGGUUcu----UCUGG- -5'
13995 5' -54.9 NC_003521.1 + 150729 0.67 0.969911
Target:  5'- gCCGUGggccacguccuggGCCGGCugCCC----GGACUg -3'
miRNA:   3'- -GGCACa------------CGGUCGugGGGuucuUCUGG- -5'
13995 5' -54.9 NC_003521.1 + 151572 0.71 0.816272
Target:  5'- cUCGUGUcaccgcGUCAGCACgCCCGauggggaaaucuugGGAGGGCCc -3'
miRNA:   3'- -GGCACA------CGGUCGUG-GGGU--------------UCUUCUGG- -5'
13995 5' -54.9 NC_003521.1 + 152094 0.77 0.503685
Target:  5'- aCGUGcGCCGGCuCUgCGAGGAGACCc -3'
miRNA:   3'- gGCACaCGGUCGuGGgGUUCUUCUGG- -5'
13995 5' -54.9 NC_003521.1 + 152267 0.8 0.365387
Target:  5'- gCGg--GCCAGCuggugcccuGCCCCGAGGAGGCCg -3'
miRNA:   3'- gGCacaCGGUCG---------UGGGGUUCUUCUGG- -5'
13995 5' -54.9 NC_003521.1 + 152957 0.68 0.950798
Target:  5'- aCGgccugGCCAGCGCCUgCGAGGAcACCu -3'
miRNA:   3'- gGCaca--CGGUCGUGGG-GUUCUUcUGG- -5'
13995 5' -54.9 NC_003521.1 + 157171 0.67 0.968168
Target:  5'- uCCGUguccGUGCC-GCACCUgcaagaGAGAAGcCCg -3'
miRNA:   3'- -GGCA----CACGGuCGUGGGg-----UUCUUCuGG- -5'
13995 5' -54.9 NC_003521.1 + 157289 0.66 0.981869
Target:  5'- cCCGUGUGCCucgauuuccuCUCCAAGAuGAUg -3'
miRNA:   3'- -GGCACACGGucgu------GGGGUUCUuCUGg -5'
13995 5' -54.9 NC_003521.1 + 159957 0.67 0.961841
Target:  5'- aCCGaggaGUGCCAGCuacccaGCCUCAAGAucuucaucGCCg -3'
miRNA:   3'- -GGCa---CACGGUCG------UGGGGUUCUuc------UGG- -5'
13995 5' -54.9 NC_003521.1 + 160730 0.67 0.968168
Target:  5'- aUCGUGgucgcgccGUCGGCACCCCcgauGAGcaGAGACa -3'
miRNA:   3'- -GGCACa-------CGGUCGUGGGG----UUC--UUCUGg -5'
13995 5' -54.9 NC_003521.1 + 163568 0.69 0.91166
Target:  5'- cCCGgcgGCgAGUACCCCGu--GGACCc -3'
miRNA:   3'- -GGCacaCGgUCGUGGGGUucuUCUGG- -5'
13995 5' -54.9 NC_003521.1 + 164572 0.69 0.90576
Target:  5'- gCCGUGcGCCucucGCGCCUCAcgcucGAGGACg -3'
miRNA:   3'- -GGCACaCGGu---CGUGGGGUu----CUUCUGg -5'
13995 5' -54.9 NC_003521.1 + 164653 0.67 0.966354
Target:  5'- cCCGUGUGUCaaaucaaaccuacguGGUgaACCCCGuGAcgacgAGGCCg -3'
miRNA:   3'- -GGCACACGG---------------UCG--UGGGGUuCU-----UCUGG- -5'
13995 5' -54.9 NC_003521.1 + 164833 0.73 0.728504
Target:  5'- aCGUGcUGaCGGCGCCCgGcGAGGGCCg -3'
miRNA:   3'- gGCAC-ACgGUCGUGGGgUuCUUCUGG- -5'
13995 5' -54.9 NC_003521.1 + 165038 0.67 0.971034
Target:  5'- -gGUGcUGCCGcggcgucuGCACCUgGAGgcGGCCu -3'
miRNA:   3'- ggCAC-ACGGU--------CGUGGGgUUCuuCUGG- -5'
13995 5' -54.9 NC_003521.1 + 167070 0.67 0.958372
Target:  5'- gCCG-GUGCCGGC-CCaCAuguAGAAGAgCa -3'
miRNA:   3'- -GGCaCACGGUCGuGGgGU---UCUUCUgG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.