miRNA display CGI


Results 41 - 60 of 198 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13995 5' -54.9 NC_003521.1 + 194317 1.13 0.003609
Target:  5'- cCCGUGUGCCAGCACCCCAAGAAGACCc -3'
miRNA:   3'- -GGCACACGGUCGUGGGGUUCUUCUGG- -5'
13995 5' -54.9 NC_003521.1 + 194282 0.67 0.968168
Target:  5'- cCCGgcgcgagGCCcugguGCGCCUgGAGAAGACg -3'
miRNA:   3'- -GGCaca----CGGu----CGUGGGgUUCUUCUGg -5'
13995 5' -54.9 NC_003521.1 + 194080 0.71 0.835177
Target:  5'- ---aGUuCCAGCACCCCGAGAGucCCu -3'
miRNA:   3'- ggcaCAcGGUCGUGGGGUUCUUcuGG- -5'
13995 5' -54.9 NC_003521.1 + 193151 0.7 0.872289
Target:  5'- gCCGUGUcgucggcGCaCAGCAUCUCAGGA--GCCg -3'
miRNA:   3'- -GGCACA-------CG-GUCGUGGGGUUCUucUGG- -5'
13995 5' -54.9 NC_003521.1 + 192913 0.71 0.848564
Target:  5'- gCCGUGUGgaguuucugcguucCCAgagccGCGCCCUggGAcacuGGGCCa -3'
miRNA:   3'- -GGCACAC--------------GGU-----CGUGGGGuuCU----UCUGG- -5'
13995 5' -54.9 NC_003521.1 + 188490 0.68 0.932532
Target:  5'- gCCGUGgGCCugGGUccGCCgCCGAGAuacgaggAGGCCg -3'
miRNA:   3'- -GGCACaCGG--UCG--UGG-GGUUCU-------UCUGG- -5'
13995 5' -54.9 NC_003521.1 + 186524 0.68 0.942355
Target:  5'- gCgGUGUcGCCAGCggggGCUCCGuGGGAGGCa -3'
miRNA:   3'- -GgCACA-CGGUCG----UGGGGU-UCUUCUGg -5'
13995 5' -54.9 NC_003521.1 + 184411 0.66 0.973711
Target:  5'- aCCGcgaGUaCCGGCGCUgCGAGGAGuCCu -3'
miRNA:   3'- -GGCa--CAcGGUCGUGGgGUUCUUCuGG- -5'
13995 5' -54.9 NC_003521.1 + 184365 0.73 0.718906
Target:  5'- gCCGUG-GCgCGGCGCCUCucGGAccuGGGCCa -3'
miRNA:   3'- -GGCACaCG-GUCGUGGGGu-UCU---UCUGG- -5'
13995 5' -54.9 NC_003521.1 + 183246 0.66 0.982642
Target:  5'- uUCGcc-GCCGGCGCCCUc-GAAGGCg -3'
miRNA:   3'- -GGCacaCGGUCGUGGGGuuCUUCUGg -5'
13995 5' -54.9 NC_003521.1 + 175964 0.69 0.91166
Target:  5'- cCCGUG-GCCGGgGguaCCCGAGAucGCCg -3'
miRNA:   3'- -GGCACaCGGUCgUg--GGGUUCUucUGG- -5'
13995 5' -54.9 NC_003521.1 + 172205 0.69 0.92802
Target:  5'- gCGUGga-CAGCGCCgaguCgAAGAAGGCCg -3'
miRNA:   3'- gGCACacgGUCGUGG----GgUUCUUCUGG- -5'
13995 5' -54.9 NC_003521.1 + 172003 0.72 0.801758
Target:  5'- aCCGacUGUGCCAGgGCCCgCAAGucuauccGGACg -3'
miRNA:   3'- -GGC--ACACGGUCgUGGG-GUUCu------UCUGg -5'
13995 5' -54.9 NC_003521.1 + 169776 0.66 0.976204
Target:  5'- -gGUGUGCaCGGUACgCCA--GAGGCUg -3'
miRNA:   3'- ggCACACG-GUCGUGgGGUucUUCUGG- -5'
13995 5' -54.9 NC_003521.1 + 169595 0.66 0.982642
Target:  5'- uCUGUGcUGUCAGUGCCgCGguuguAGggGACg -3'
miRNA:   3'- -GGCAC-ACGGUCGUGGgGU-----UCuuCUGg -5'
13995 5' -54.9 NC_003521.1 + 169520 0.72 0.810348
Target:  5'- gCCGccccagGUGCUGGUGCCCCAGG--GGCCc -3'
miRNA:   3'- -GGCa-----CACGGUCGUGGGGUUCuuCUGG- -5'
13995 5' -54.9 NC_003521.1 + 167801 0.67 0.958372
Target:  5'- uCCGUcaGCCAGCACCaCCGcgcaugucagccAGAgcaggagcggccAGGCCc -3'
miRNA:   3'- -GGCAcaCGGUCGUGG-GGU------------UCU------------UCUGG- -5'
13995 5' -54.9 NC_003521.1 + 167458 0.67 0.965105
Target:  5'- cCCGUG-GUCAG-AUCCgagaGGGAAGGCCu -3'
miRNA:   3'- -GGCACaCGGUCgUGGGg---UUCUUCUGG- -5'
13995 5' -54.9 NC_003521.1 + 167070 0.67 0.958372
Target:  5'- gCCG-GUGCCGGC-CCaCAuguAGAAGAgCa -3'
miRNA:   3'- -GGCaCACGGUCGuGGgGU---UCUUCUgG- -5'
13995 5' -54.9 NC_003521.1 + 165038 0.67 0.971034
Target:  5'- -gGUGcUGCCGcggcgucuGCACCUgGAGgcGGCCu -3'
miRNA:   3'- ggCAC-ACGGU--------CGUGGGgUUCuuCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.