Results 81 - 100 of 198 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13995 | 5' | -54.9 | NC_003521.1 | + | 141802 | 0.71 | 0.818787 |
Target: 5'- cCCGga-GCCGGCGCCaucgucuaCAAGAcGACCg -3' miRNA: 3'- -GGCacaCGGUCGUGGg-------GUUCUuCUGG- -5' |
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13995 | 5' | -54.9 | NC_003521.1 | + | 140592 | 0.67 | 0.958372 |
Target: 5'- uUCGcG-GCCGGCgagacgcuccGCUUCGAGGAGGCCg -3' miRNA: 3'- -GGCaCaCGGUCG----------UGGGGUUCUUCUGG- -5' |
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13995 | 5' | -54.9 | NC_003521.1 | + | 138616 | 0.67 | 0.965105 |
Target: 5'- -gGUGUGCCAgGUAgUCUcGGAAGACg -3' miRNA: 3'- ggCACACGGU-CGUgGGGuUCUUCUGg -5' |
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13995 | 5' | -54.9 | NC_003521.1 | + | 138235 | 0.71 | 0.827066 |
Target: 5'- aCGUG-GCCAGCgccaGCCCCGAGAcgcAGuuCu -3' miRNA: 3'- gGCACaCGGUCG----UGGGGUUCU---UCugG- -5' |
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13995 | 5' | -54.9 | NC_003521.1 | + | 137919 | 0.67 | 0.953546 |
Target: 5'- cCCGUG-GCUGGcgggucgcgguuccCugCCCGAGGAGcCCg -3' miRNA: 3'- -GGCACaCGGUC--------------GugGGGUUCUUCuGG- -5' |
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13995 | 5' | -54.9 | NC_003521.1 | + | 137139 | 0.69 | 0.917338 |
Target: 5'- aCCGUcGUGguucaUCAGCACCuucggCCAcacGGAGGGCCa -3' miRNA: 3'- -GGCA-CAC-----GGUCGUGG-----GGU---UCUUCUGG- -5' |
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13995 | 5' | -54.9 | NC_003521.1 | + | 136589 | 0.67 | 0.961842 |
Target: 5'- cCUG-GUGCUcgaucacucGGCACUCUcgugcGAGGAGGCCg -3' miRNA: 3'- -GGCaCACGG---------UCGUGGGG-----UUCUUCUGG- -5' |
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13995 | 5' | -54.9 | NC_003521.1 | + | 135909 | 0.66 | 0.982642 |
Target: 5'- cCCGUcuuuGUGCCGGCcucggccacgGCCgCGGGAuGugCg -3' miRNA: 3'- -GGCA----CACGGUCG----------UGGgGUUCUuCugG- -5' |
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13995 | 5' | -54.9 | NC_003521.1 | + | 134611 | 0.7 | 0.865819 |
Target: 5'- aUGUGcGCCGcGCACUCgGAGAuGGCCa -3' miRNA: 3'- gGCACaCGGU-CGUGGGgUUCUuCUGG- -5' |
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13995 | 5' | -54.9 | NC_003521.1 | + | 133337 | 0.67 | 0.965105 |
Target: 5'- aCCaGUGUGCUcugGGCGCCggaCGuGGAGAUCa -3' miRNA: 3'- -GG-CACACGG---UCGUGGg--GUuCUUCUGG- -5' |
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13995 | 5' | -54.9 | NC_003521.1 | + | 132289 | 0.69 | 0.92802 |
Target: 5'- aCCGUGUGCC---GCCaCGuGGAGGCCa -3' miRNA: 3'- -GGCACACGGucgUGGgGUuCUUCUGG- -5' |
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13995 | 5' | -54.9 | NC_003521.1 | + | 130882 | 0.68 | 0.941012 |
Target: 5'- aCCGUGUGCCuGCGgcgacagaucgaccCCCCGuc-AGGCa -3' miRNA: 3'- -GGCACACGGuCGU--------------GGGGUucuUCUGg -5' |
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13995 | 5' | -54.9 | NC_003521.1 | + | 130504 | 0.69 | 0.927507 |
Target: 5'- gCCGcGUcaugaugGCCcugcGGCugCCCGAGcAGACCg -3' miRNA: 3'- -GGCaCA-------CGG----UCGugGGGUUCuUCUGG- -5' |
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13995 | 5' | -54.9 | NC_003521.1 | + | 130178 | 0.75 | 0.620424 |
Target: 5'- gCCGUgaccGUGCCGGCGCCCggCGAGAu-GCCg -3' miRNA: 3'- -GGCA----CACGGUCGUGGG--GUUCUucUGG- -5' |
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13995 | 5' | -54.9 | NC_003521.1 | + | 129068 | 0.71 | 0.850872 |
Target: 5'- aCCGUGUGCaUGGC-CUCCAcguuGAGGAUCu -3' miRNA: 3'- -GGCACACG-GUCGuGGGGUu---CUUCUGG- -5' |
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13995 | 5' | -54.9 | NC_003521.1 | + | 127684 | 0.68 | 0.950798 |
Target: 5'- uCCGUGuUGCCGuGCACCagcacguccaCCAgguAGAAGAgCu -3' miRNA: 3'- -GGCAC-ACGGU-CGUGG----------GGU---UCUUCUgG- -5' |
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13995 | 5' | -54.9 | NC_003521.1 | + | 126308 | 0.67 | 0.96542 |
Target: 5'- cCCGUGgcggcggugggcacgGCggccacgacggaCAGCACCCagauGAAGGCCa -3' miRNA: 3'- -GGCACa--------------CG------------GUCGUGGGguu-CUUCUGG- -5' |
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13995 | 5' | -54.9 | NC_003521.1 | + | 126124 | 0.67 | 0.971034 |
Target: 5'- cUCGUcGUGCCGGUACacgugcaUgGGGAAGACg -3' miRNA: 3'- -GGCA-CACGGUCGUGg------GgUUCUUCUGg -5' |
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13995 | 5' | -54.9 | NC_003521.1 | + | 121604 | 0.67 | 0.958372 |
Target: 5'- gCGUGcucaaccugcUGCCgGGCAagaCCGAGAAGAUCa -3' miRNA: 3'- gGCAC----------ACGG-UCGUgg-GGUUCUUCUGG- -5' |
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13995 | 5' | -54.9 | NC_003521.1 | + | 121068 | 0.66 | 0.978518 |
Target: 5'- -gGUGUGCUGGUACUCCAGcuu-GCCg -3' miRNA: 3'- ggCACACGGUCGUGGGGUUcuucUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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