miRNA display CGI


Results 41 - 60 of 198 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13995 5' -54.9 NC_003521.1 + 3400 0.73 0.766028
Target:  5'- cCCGac-GCCGGCAUCCgGGGAugGGGCCa -3'
miRNA:   3'- -GGCacaCGGUCGUGGGgUUCU--UCUGG- -5'
13995 5' -54.9 NC_003521.1 + 77624 0.73 0.718907
Target:  5'- cCCGUGa--CGGCGCCggCCGAGAGGAUCg -3'
miRNA:   3'- -GGCACacgGUCGUGG--GGUUCUUCUGG- -5'
13995 5' -54.9 NC_003521.1 + 102705 0.74 0.709238
Target:  5'- gCG-GUGCCAGguCUCgGAGAAGACg -3'
miRNA:   3'- gGCaCACGGUCguGGGgUUCUUCUGg -5'
13995 5' -54.9 NC_003521.1 + 85486 0.75 0.660138
Target:  5'- gCCG-GUGCCcGCGCCCCcgccGGGACCc -3'
miRNA:   3'- -GGCaCACGGuCGUGGGGuuc-UUCUGG- -5'
13995 5' -54.9 NC_003521.1 + 105051 0.75 0.640293
Target:  5'- cCCGUGcGCgAGCAgCCCCAGGGGcGAUCc -3'
miRNA:   3'- -GGCACaCGgUCGU-GGGGUUCUU-CUGG- -5'
13995 5' -54.9 NC_003521.1 + 110128 0.7 0.893297
Target:  5'- cCCGUuuuucaGUGCUuucacggcGUACCCguGGAAGGCCg -3'
miRNA:   3'- -GGCA------CACGGu-------CGUGGGguUCUUCUGG- -5'
13995 5' -54.9 NC_003521.1 + 115740 0.7 0.893297
Target:  5'- gCCGUugcggGCCAGguCCUCGgggaagggaucAGAAGGCCg -3'
miRNA:   3'- -GGCAca---CGGUCguGGGGU-----------UCUUCUGG- -5'
13995 5' -54.9 NC_003521.1 + 118947 0.68 0.933023
Target:  5'- cCCGUcaggGCCAGCG-CCCGAGAcAGuCCc -3'
miRNA:   3'- -GGCAca--CGGUCGUgGGGUUCU-UCuGG- -5'
13995 5' -54.9 NC_003521.1 + 88673 0.68 0.933023
Target:  5'- uCgGUGgGCCGGCGgCCCGGcucGggGACa -3'
miRNA:   3'- -GgCACaCGGUCGUgGGGUU---CuuCUGg -5'
13995 5' -54.9 NC_003521.1 + 504 0.68 0.932533
Target:  5'- aCCGUaUGCCAGCugUgaguCCGAGAacgaacuggaaggAGACUg -3'
miRNA:   3'- -GGCAcACGGUCGugG----GGUUCU-------------UCUGG- -5'
13995 5' -54.9 NC_003521.1 + 132289 0.69 0.92802
Target:  5'- aCCGUGUGCC---GCCaCGuGGAGGCCa -3'
miRNA:   3'- -GGCACACGGucgUGGgGUuCUUCUGG- -5'
13995 5' -54.9 NC_003521.1 + 130504 0.69 0.927507
Target:  5'- gCCGcGUcaugaugGCCcugcGGCugCCCGAGcAGACCg -3'
miRNA:   3'- -GGCaCA-------CGG----UCGugGGGUUCuUCUGG- -5'
13995 5' -54.9 NC_003521.1 + 218337 0.69 0.922792
Target:  5'- aCGgugGUGCCGGUguucAUCaCCAGGcAGGCCa -3'
miRNA:   3'- gGCa--CACGGUCG----UGG-GGUUCuUCUGG- -5'
13995 5' -54.9 NC_003521.1 + 11943 0.69 0.922792
Target:  5'- gCCGUGUuuuGUguGUAUCCCAAGucaGAGAgCCg -3'
miRNA:   3'- -GGCACA---CGguCGUGGGGUUC---UUCU-GG- -5'
13995 5' -54.9 NC_003521.1 + 175964 0.69 0.91166
Target:  5'- cCCGUG-GCCGGgGguaCCCGAGAucGCCg -3'
miRNA:   3'- -GGCACaCGGUCgUg--GGGUUCUucUGG- -5'
13995 5' -54.9 NC_003521.1 + 104200 0.69 0.91108
Target:  5'- cCCGUG-GCCGauuacgugcugcuGCAgCCCAGcGAGGACg -3'
miRNA:   3'- -GGCACaCGGU-------------CGUgGGGUU-CUUCUGg -5'
13995 5' -54.9 NC_003521.1 + 148434 0.69 0.90576
Target:  5'- gCCGc--GCCGGCgGCUCCAGGGGuGGCCg -3'
miRNA:   3'- -GGCacaCGGUCG-UGGGGUUCUU-CUGG- -5'
13995 5' -54.9 NC_003521.1 + 75241 0.69 0.90576
Target:  5'- ---cGUGCCcuucauGCACgCCgAGGAGGGCCg -3'
miRNA:   3'- ggcaCACGGu-----CGUG-GGgUUCUUCUGG- -5'
13995 5' -54.9 NC_003521.1 + 73569 0.69 0.899638
Target:  5'- gCCGUGgUGCgGGCGCUggUCAugaacGAGGACCu -3'
miRNA:   3'- -GGCAC-ACGgUCGUGG--GGUu----CUUCUGG- -5'
13995 5' -54.9 NC_003521.1 + 202478 0.7 0.893297
Target:  5'- gCUGgGUGCCGucuucggcuacuGC-CCCCAGGAcGGCCa -3'
miRNA:   3'- -GGCaCACGGU------------CGuGGGGUUCUuCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.