Results 81 - 100 of 198 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13995 | 5' | -54.9 | NC_003521.1 | + | 239832 | 0.67 | 0.954692 |
Target: 5'- gCCGUacgGCCGGC-CCagCGGGAgcAGACCg -3' miRNA: 3'- -GGCAca-CGGUCGuGGg-GUUCU--UCUGG- -5' |
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13995 | 5' | -54.9 | NC_003521.1 | + | 140592 | 0.67 | 0.958372 |
Target: 5'- uUCGcG-GCCGGCgagacgcuccGCUUCGAGGAGGCCg -3' miRNA: 3'- -GGCaCaCGGUCG----------UGGGGUUCUUCUGG- -5' |
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13995 | 5' | -54.9 | NC_003521.1 | + | 167801 | 0.67 | 0.958372 |
Target: 5'- uCCGUcaGCCAGCACCaCCGcgcaugucagccAGAgcaggagcggccAGGCCc -3' miRNA: 3'- -GGCAcaCGGUCGUGG-GGU------------UCU------------UCUGG- -5' |
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13995 | 5' | -54.9 | NC_003521.1 | + | 200908 | 0.67 | 0.958372 |
Target: 5'- gCCaUGaGCCAGCGCUuuccgcgcccgCCGGGAcGACCg -3' miRNA: 3'- -GGcACaCGGUCGUGG-----------GGUUCUuCUGG- -5' |
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13995 | 5' | -54.9 | NC_003521.1 | + | 59606 | 0.67 | 0.958372 |
Target: 5'- aCGguaGUGgCGGCgGCCCCGGcGgcGACCg -3' miRNA: 3'- gGCa--CACgGUCG-UGGGGUU-CuuCUGG- -5' |
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13995 | 5' | -54.9 | NC_003521.1 | + | 111720 | 0.67 | 0.961842 |
Target: 5'- uCCGUGcGCCGGCACgCCAcccacaGCCu -3' miRNA: 3'- -GGCACaCGGUCGUGgGGUucuuc-UGG- -5' |
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13995 | 5' | -54.9 | NC_003521.1 | + | 136589 | 0.67 | 0.961842 |
Target: 5'- cCUG-GUGCUcgaucacucGGCACUCUcgugcGAGGAGGCCg -3' miRNA: 3'- -GGCaCACGG---------UCGUGGGG-----UUCUUCUGG- -5' |
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13995 | 5' | -54.9 | NC_003521.1 | + | 36213 | 0.68 | 0.950798 |
Target: 5'- aCGcUGUcGCCAcauGgACCCCGAGcAGGACUa -3' miRNA: 3'- gGC-ACA-CGGU---CgUGGGGUUC-UUCUGG- -5' |
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13995 | 5' | -54.9 | NC_003521.1 | + | 55957 | 0.68 | 0.949587 |
Target: 5'- aCCGUGUGCa---GCCCCAccacgccgaugugcAGggG-CCg -3' miRNA: 3'- -GGCACACGgucgUGGGGU--------------UCuuCuGG- -5' |
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13995 | 5' | -54.9 | NC_003521.1 | + | 504 | 0.68 | 0.932533 |
Target: 5'- aCCGUaUGCCAGCugUgaguCCGAGAacgaacuggaaggAGACUg -3' miRNA: 3'- -GGCAcACGGUCGugG----GGUUCU-------------UCUGG- -5' |
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13995 | 5' | -54.9 | NC_003521.1 | + | 88673 | 0.68 | 0.933023 |
Target: 5'- uCgGUGgGCCGGCGgCCCGGcucGggGACa -3' miRNA: 3'- -GgCACaCGGUCGUgGGGUU---CuuCUGg -5' |
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13995 | 5' | -54.9 | NC_003521.1 | + | 118947 | 0.68 | 0.933023 |
Target: 5'- cCCGUcaggGCCAGCG-CCCGAGAcAGuCCc -3' miRNA: 3'- -GGCAca--CGGUCGUgGGGUUCU-UCuGG- -5' |
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13995 | 5' | -54.9 | NC_003521.1 | + | 117285 | 0.68 | 0.936391 |
Target: 5'- gCCGUGgUGCCGGCuccccucacgcuGCCCCAcgacGGAguuuauuuacccaaAGACg -3' miRNA: 3'- -GGCAC-ACGGUCG------------UGGGGU----UCU--------------UCUGg -5' |
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13995 | 5' | -54.9 | NC_003521.1 | + | 35473 | 0.68 | 0.937801 |
Target: 5'- gUCGUGcacgGCgCAGCugccGCCgCCGAGGAGGCg -3' miRNA: 3'- -GGCACa---CG-GUCG----UGG-GGUUCUUCUGg -5' |
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13995 | 5' | -54.9 | NC_003521.1 | + | 102472 | 0.68 | 0.937801 |
Target: 5'- aCCGUGUGCuUAGagaGgCCCGAGAc-GCCg -3' miRNA: 3'- -GGCACACG-GUCg--UgGGGUUCUucUGG- -5' |
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13995 | 5' | -54.9 | NC_003521.1 | + | 215144 | 0.68 | 0.937801 |
Target: 5'- aCGaagGCCAGCGUCaCCAGGAcguGGACCa -3' miRNA: 3'- gGCacaCGGUCGUGG-GGUUCU---UCUGG- -5' |
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13995 | 5' | -54.9 | NC_003521.1 | + | 214651 | 0.68 | 0.941909 |
Target: 5'- aCCGUGaugGCCgucuccagcagcAGCAgUCCGuagacgcGGAAGACCa -3' miRNA: 3'- -GGCACa--CGG------------UCGUgGGGU-------UCUUCUGG- -5' |
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13995 | 5' | -54.9 | NC_003521.1 | + | 186524 | 0.68 | 0.942355 |
Target: 5'- gCgGUGUcGCCAGCggggGCUCCGuGGGAGGCa -3' miRNA: 3'- -GgCACA-CGGUCG----UGGGGU-UCUUCUGg -5' |
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13995 | 5' | -54.9 | NC_003521.1 | + | 212024 | 0.68 | 0.942355 |
Target: 5'- gCCGUGUGCCaAGUGgCaUGAGAGGGCg -3' miRNA: 3'- -GGCACACGG-UCGUgGgGUUCUUCUGg -5' |
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13995 | 5' | -54.9 | NC_003521.1 | + | 37479 | 0.68 | 0.946686 |
Target: 5'- aCCGUGgUGCCgcagGGCACCCCcauc--GCCa -3' miRNA: 3'- -GGCAC-ACGG----UCGUGGGGuucuucUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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