miRNA display CGI


Results 61 - 80 of 198 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13995 5' -54.9 NC_003521.1 + 87740 0.69 0.91108
Target:  5'- gCGUGguggGCCccGGCccggGCCCCGgcggcggAGGAGGCCu -3'
miRNA:   3'- gGCACa---CGG--UCG----UGGGGU-------UCUUCUGG- -5'
13995 5' -54.9 NC_003521.1 + 7199 0.69 0.922792
Target:  5'- gCCGcUGaaauUGCCcucgAGCACCCCGccGGAGAUCa -3'
miRNA:   3'- -GGC-AC----ACGG----UCGUGGGGUu-CUUCUGG- -5'
13995 5' -54.9 NC_003521.1 + 53578 0.76 0.5907
Target:  5'- aUCGUGUcGCCGGCACCCaugcuGguGGCCg -3'
miRNA:   3'- -GGCACA-CGGUCGUGGGguu--CuuCUGG- -5'
13995 5' -54.9 NC_003521.1 + 208414 0.73 0.725633
Target:  5'- gCCGUGcGCCAcgggcugcugugucGCACgCCCGAGGAccuGGCCa -3'
miRNA:   3'- -GGCACaCGGU--------------CGUG-GGGUUCUU---CUGG- -5'
13995 5' -54.9 NC_003521.1 + 17358 0.72 0.78415
Target:  5'- gCCGUGacGCCGGCGCggcggcccagaCUCGAGAgGGACCg -3'
miRNA:   3'- -GGCACa-CGGUCGUG-----------GGGUUCU-UCUGG- -5'
13995 5' -54.9 NC_003521.1 + 169520 0.72 0.810348
Target:  5'- gCCGccccagGUGCUGGUGCCCCAGG--GGCCc -3'
miRNA:   3'- -GGCa-----CACGGUCGUGGGGUUCuuCUGG- -5'
13995 5' -54.9 NC_003521.1 + 14967 0.71 0.835177
Target:  5'- aCCGcaccUGUGCCcGCACCaCCAcGAgcgcgccguGGACCa -3'
miRNA:   3'- -GGC----ACACGGuCGUGG-GGUuCU---------UCUGG- -5'
13995 5' -54.9 NC_003521.1 + 38259 0.7 0.865819
Target:  5'- gCGgcccaggGUCAGCAgCCCCAGGAGG-CCg -3'
miRNA:   3'- gGCaca----CGGUCGU-GGGGUUCUUCuGG- -5'
13995 5' -54.9 NC_003521.1 + 114705 0.7 0.872998
Target:  5'- aCGUGUaCCGGCACgaCGAGAucGACCg -3'
miRNA:   3'- gGCACAcGGUCGUGggGUUCUu-CUGG- -5'
13995 5' -54.9 NC_003521.1 + 72797 0.7 0.893297
Target:  5'- aUGUGgGUCucgGGCGCCaCCAAGAaAGACCu -3'
miRNA:   3'- gGCACaCGG---UCGUGG-GGUUCU-UCUGG- -5'
13995 5' -54.9 NC_003521.1 + 40743 0.67 0.971034
Target:  5'- gCUGUGUGCUGGCGaggCCAAGccGGCg -3'
miRNA:   3'- -GGCACACGGUCGUgg-GGUUCuuCUGg -5'
13995 5' -54.9 NC_003521.1 + 74698 0.67 0.968168
Target:  5'- gCCGaccUGCCGGcCGCCCUgAAGcAGGCCc -3'
miRNA:   3'- -GGCac-ACGGUC-GUGGGG-UUCuUCUGG- -5'
13995 5' -54.9 NC_003521.1 + 40826 0.68 0.932532
Target:  5'- aCCGUaUGCCAGCugUgaguCCGAGAacgaacuggaaggAGACUg -3'
miRNA:   3'- -GGCAcACGGUCGugG----GGUUCU-------------UCUGG- -5'
13995 5' -54.9 NC_003521.1 + 130882 0.68 0.941012
Target:  5'- aCCGUGUGCCuGCGgcgacagaucgaccCCCCGuc-AGGCa -3'
miRNA:   3'- -GGCACACGGuCGU--------------GGGGUucuUCUGg -5'
13995 5' -54.9 NC_003521.1 + 117400 0.68 0.950798
Target:  5'- gCGcUGUGCUGGCACCggguGGAGGGCg -3'
miRNA:   3'- gGC-ACACGGUCGUGGggu-UCUUCUGg -5'
13995 5' -54.9 NC_003521.1 + 198987 0.68 0.952381
Target:  5'- aCCGUcaGCCucagcgucugauguuGGCACUCCA--GAGACCa -3'
miRNA:   3'- -GGCAcaCGG---------------UCGUGGGGUucUUCUGG- -5'
13995 5' -54.9 NC_003521.1 + 11834 0.67 0.956189
Target:  5'- uCCGUGcUGCCGGUccugcgccGCCCgCGcaccuccucggacgaGGAGGACUc -3'
miRNA:   3'- -GGCAC-ACGGUCG--------UGGG-GU---------------UCUUCUGG- -5'
13995 5' -54.9 NC_003521.1 + 167070 0.67 0.958372
Target:  5'- gCCG-GUGCCGGC-CCaCAuguAGAAGAgCa -3'
miRNA:   3'- -GGCaCACGGUCGuGGgGU---UCUUCUgG- -5'
13995 5' -54.9 NC_003521.1 + 119981 0.67 0.965105
Target:  5'- gCCGaGU-CCAGCAUggcaCCCGAGGAGgauACCg -3'
miRNA:   3'- -GGCaCAcGGUCGUG----GGGUUCUUC---UGG- -5'
13995 5' -54.9 NC_003521.1 + 126308 0.67 0.96542
Target:  5'- cCCGUGgcggcggugggcacgGCggccacgacggaCAGCACCCagauGAAGGCCa -3'
miRNA:   3'- -GGCACa--------------CG------------GUCGUGGGguu-CUUCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.