miRNA display CGI


Results 81 - 100 of 198 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13995 5' -54.9 NC_003521.1 + 40826 0.68 0.932532
Target:  5'- aCCGUaUGCCAGCugUgaguCCGAGAacgaacuggaaggAGACUg -3'
miRNA:   3'- -GGCAcACGGUCGugG----GGUUCU-------------UCUGG- -5'
13995 5' -54.9 NC_003521.1 + 130882 0.68 0.941012
Target:  5'- aCCGUGUGCCuGCGgcgacagaucgaccCCCCGuc-AGGCa -3'
miRNA:   3'- -GGCACACGGuCGU--------------GGGGUucuUCUGg -5'
13995 5' -54.9 NC_003521.1 + 33476 0.68 0.950798
Target:  5'- gCCGgccGcGCCGacccgagggacGCGCCCCccGAAGACCu -3'
miRNA:   3'- -GGCa--CaCGGU-----------CGUGGGGuuCUUCUGG- -5'
13995 5' -54.9 NC_003521.1 + 152957 0.68 0.950798
Target:  5'- aCGgccugGCCAGCGCCUgCGAGGAcACCu -3'
miRNA:   3'- gGCaca--CGGUCGUGGG-GUUCUUcUGG- -5'
13995 5' -54.9 NC_003521.1 + 39605 0.67 0.954692
Target:  5'- gCCGUacgGCCGGC-CCagCGGGAgcAGACCg -3'
miRNA:   3'- -GGCAca-CGGUCGuGGg-GUUCU--UCUGG- -5'
13995 5' -54.9 NC_003521.1 + 121604 0.67 0.958372
Target:  5'- gCGUGcucaaccugcUGCCgGGCAagaCCGAGAAGAUCa -3'
miRNA:   3'- gGCAC----------ACGG-UCGUgg-GGUUCUUCUGG- -5'
13995 5' -54.9 NC_003521.1 + 195175 0.67 0.965105
Target:  5'- gUGUGcGCCGG-ACCCCGcGGAG-CCg -3'
miRNA:   3'- gGCACaCGGUCgUGGGGUuCUUCuGG- -5'
13995 5' -54.9 NC_003521.1 + 160730 0.67 0.968168
Target:  5'- aUCGUGgucgcgccGUCGGCACCCCcgauGAGcaGAGACa -3'
miRNA:   3'- -GGCACa-------CGGUCGUGGGG----UUC--UUCUGg -5'
13995 5' -54.9 NC_003521.1 + 236253 0.7 0.889389
Target:  5'- aCCGgagGCCGGCguguGCCCCGGccguagugacuccccGggGACCc -3'
miRNA:   3'- -GGCacaCGGUCG----UGGGGUU---------------CuuCUGG- -5'
13995 5' -54.9 NC_003521.1 + 100856 0.66 0.978518
Target:  5'- -gGUGUuCCacgAGCGCCUCAAGAGcGCCc -3'
miRNA:   3'- ggCACAcGG---UCGUGGGGUUCUUcUGG- -5'
13995 5' -54.9 NC_003521.1 + 194391 0.66 0.980662
Target:  5'- cCCGcagccccGCCGGaUACCCUcgcacGAGGAGGCCg -3'
miRNA:   3'- -GGCaca----CGGUC-GUGGGG-----UUCUUCUGG- -5'
13995 5' -54.9 NC_003521.1 + 169595 0.66 0.982642
Target:  5'- uCUGUGcUGUCAGUGCCgCGguuguAGggGACg -3'
miRNA:   3'- -GGCAC-ACGGUCGUGGgGU-----UCuuCUGg -5'
13995 5' -54.9 NC_003521.1 + 130178 0.75 0.620424
Target:  5'- gCCGUgaccGUGCCGGCGCCCggCGAGAu-GCCg -3'
miRNA:   3'- -GGCA----CACGGUCGUGGG--GUUCUucUGG- -5'
13995 5' -54.9 NC_003521.1 + 164833 0.73 0.728504
Target:  5'- aCGUGcUGaCGGCGCCCgGcGAGGGCCg -3'
miRNA:   3'- gGCAC-ACgGUCGUGGGgUuCUUCUGG- -5'
13995 5' -54.9 NC_003521.1 + 172003 0.72 0.801758
Target:  5'- aCCGacUGUGCCAGgGCCCgCAAGucuauccGGACg -3'
miRNA:   3'- -GGC--ACACGGUCgUGGG-GUUCu------UCUGg -5'
13995 5' -54.9 NC_003521.1 + 141802 0.71 0.818787
Target:  5'- cCCGga-GCCGGCGCCaucgucuaCAAGAcGACCg -3'
miRNA:   3'- -GGCacaCGGUCGUGGg-------GUUCUuCUGG- -5'
13995 5' -54.9 NC_003521.1 + 192913 0.71 0.848564
Target:  5'- gCCGUGUGgaguuucugcguucCCAgagccGCGCCCUggGAcacuGGGCCa -3'
miRNA:   3'- -GGCACAC--------------GGU-----CGUGGGGuuCU----UCUGG- -5'
13995 5' -54.9 NC_003521.1 + 148198 0.7 0.865819
Target:  5'- uCCGUGUcaugacGUCAGCGaUCCGGcGAGGACCg -3'
miRNA:   3'- -GGCACA------CGGUCGUgGGGUU-CUUCUGG- -5'
13995 5' -54.9 NC_003521.1 + 35473 0.68 0.937801
Target:  5'- gUCGUGcacgGCgCAGCugccGCCgCCGAGGAGGCg -3'
miRNA:   3'- -GGCACa---CG-GUCG----UGG-GGUUCUUCUGg -5'
13995 5' -54.9 NC_003521.1 + 213413 0.67 0.968168
Target:  5'- aCGcUG-GUCAGCACCCgCGAGcAGAUg -3'
miRNA:   3'- gGC-ACaCGGUCGUGGG-GUUCuUCUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.