miRNA display CGI


Results 101 - 120 of 198 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13995 5' -54.9 NC_003521.1 + 138616 0.67 0.965105
Target:  5'- -gGUGUGCCAgGUAgUCUcGGAAGACg -3'
miRNA:   3'- ggCACACGGU-CGUgGGGuUCUUCUGg -5'
13995 5' -54.9 NC_003521.1 + 88673 0.68 0.933023
Target:  5'- uCgGUGgGCCGGCGgCCCGGcucGggGACa -3'
miRNA:   3'- -GgCACaCGGUCGUgGGGUU---CuuCUGg -5'
13995 5' -54.9 NC_003521.1 + 63680 0.72 0.77515
Target:  5'- uUCGUGUGUCuGCGgCCCuccgacuucAAGAAGAUCa -3'
miRNA:   3'- -GGCACACGGuCGUgGGG---------UUCUUCUGG- -5'
13995 5' -54.9 NC_003521.1 + 50291 0.67 0.968168
Target:  5'- gCCGcUGcUGCCGccGCACCucgcuccucagCCAGGGAGGCa -3'
miRNA:   3'- -GGC-AC-ACGGU--CGUGG-----------GGUUCUUCUGg -5'
13995 5' -54.9 NC_003521.1 + 213413 0.67 0.968168
Target:  5'- aCGcUG-GUCAGCACCCgCGAGcAGAUg -3'
miRNA:   3'- gGC-ACaCGGUCGUGGG-GUUCuUCUGg -5'
13995 5' -54.9 NC_003521.1 + 149658 0.67 0.965105
Target:  5'- cCUG-GUGCgGGCugCCCGAcaucguGGGCCc -3'
miRNA:   3'- -GGCaCACGgUCGugGGGUUcu----UCUGG- -5'
13995 5' -54.9 NC_003521.1 + 164653 0.67 0.966354
Target:  5'- cCCGUGUGUCaaaucaaaccuacguGGUgaACCCCGuGAcgacgAGGCCg -3'
miRNA:   3'- -GGCACACGG---------------UCG--UGGGGUuCU-----UCUGG- -5'
13995 5' -54.9 NC_003521.1 + 115120 0.67 0.964788
Target:  5'- gUCGUGaccGCCGGCGuCUCCAcuacgucGGAcaAGGCCa -3'
miRNA:   3'- -GGCACa--CGGUCGU-GGGGU-------UCU--UCUGG- -5'
13995 5' -54.9 NC_003521.1 + 134611 0.7 0.865819
Target:  5'- aUGUGcGCCGcGCACUCgGAGAuGGCCa -3'
miRNA:   3'- gGCACaCGGU-CGUGGGgUUCUuCUGG- -5'
13995 5' -54.9 NC_003521.1 + 238487 0.7 0.865819
Target:  5'- gCGgcccaggGUCAGCAgCCCCAGGAGG-CCg -3'
miRNA:   3'- gGCaca----CGGUCGU-GGGGUUCUUCuGG- -5'
13995 5' -54.9 NC_003521.1 + 504 0.68 0.932533
Target:  5'- aCCGUaUGCCAGCugUgaguCCGAGAacgaacuggaaggAGACUg -3'
miRNA:   3'- -GGCAcACGGUCGugG----GGUUCU-------------UCUGG- -5'
13995 5' -54.9 NC_003521.1 + 132289 0.69 0.92802
Target:  5'- aCCGUGUGCC---GCCaCGuGGAGGCCa -3'
miRNA:   3'- -GGCACACGGucgUGGgGUuCUUCUGG- -5'
13995 5' -54.9 NC_003521.1 + 118947 0.68 0.933023
Target:  5'- cCCGUcaggGCCAGCG-CCCGAGAcAGuCCc -3'
miRNA:   3'- -GGCAca--CGGUCGUgGGGUUCU-UCuGG- -5'
13995 5' -54.9 NC_003521.1 + 117285 0.68 0.936391
Target:  5'- gCCGUGgUGCCGGCuccccucacgcuGCCCCAcgacGGAguuuauuuacccaaAGACg -3'
miRNA:   3'- -GGCAC-ACGGUCG------------UGGGGU----UCU--------------UCUGg -5'
13995 5' -54.9 NC_003521.1 + 25753 0.67 0.968168
Target:  5'- aCGaUGUGUCcgGGCACCaCCAGGcAGcCCa -3'
miRNA:   3'- gGC-ACACGG--UCGUGG-GGUUCuUCuGG- -5'
13995 5' -54.9 NC_003521.1 + 35473 0.68 0.937801
Target:  5'- gUCGUGcacgGCgCAGCugccGCCgCCGAGGAGGCg -3'
miRNA:   3'- -GGCACa---CG-GUCG----UGG-GGUUCUUCUGg -5'
13995 5' -54.9 NC_003521.1 + 167458 0.67 0.965105
Target:  5'- cCCGUG-GUCAG-AUCCgagaGGGAAGGCCu -3'
miRNA:   3'- -GGCACaCGGUCgUGGGg---UUCUUCUGG- -5'
13995 5' -54.9 NC_003521.1 + 148980 0.67 0.961842
Target:  5'- uCCGcGUGCUGGCGCgcaccuucacgCCCGuccAGAuccAGACCg -3'
miRNA:   3'- -GGCaCACGGUCGUG-----------GGGU---UCU---UCUGG- -5'
13995 5' -54.9 NC_003521.1 + 80144 0.67 0.961842
Target:  5'- gCCG-GUGCU-GCGCgUCCAgccgcuGGAGGGCCa -3'
miRNA:   3'- -GGCaCACGGuCGUG-GGGU------UCUUCUGG- -5'
13995 5' -54.9 NC_003521.1 + 206545 0.67 0.961842
Target:  5'- cCCGUG-GCCcGC-CCCCGuGAcaGGACg -3'
miRNA:   3'- -GGCACaCGGuCGuGGGGUuCU--UCUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.