miRNA display CGI


Results 1 - 20 of 187 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13996 5' -60.9 NC_003521.1 + 30924 0.66 0.821708
Target:  5'- aGCGGUCCUggggcaGUCGCCG-UGCCGUa-- -3'
miRNA:   3'- aUGCUAGGG------CGGCGGCuGCGGCAgau -5'
13996 5' -60.9 NC_003521.1 + 136553 0.66 0.821708
Target:  5'- gGCGcgCuUCGCCGCCGACuggcagcuGCCG-CUGc -3'
miRNA:   3'- aUGCuaG-GGCGGCGGCUG--------CGGCaGAU- -5'
13996 5' -60.9 NC_003521.1 + 8471 0.66 0.821708
Target:  5'- cGCGGUgCCGCCGC-GACuGCUG-CUAc -3'
miRNA:   3'- aUGCUAgGGCGGCGgCUG-CGGCaGAU- -5'
13996 5' -60.9 NC_003521.1 + 145989 0.66 0.821708
Target:  5'- cGCGcuUCCCGCUGCCGGCuuUUGUCa- -3'
miRNA:   3'- aUGCu-AGGGCGGCGGCUGc-GGCAGau -5'
13996 5' -60.9 NC_003521.1 + 218611 0.66 0.821708
Target:  5'- gUACGGUUCgGCCGCCaGCGCgCGg--- -3'
miRNA:   3'- -AUGCUAGGgCGGCGGcUGCG-GCagau -5'
13996 5' -60.9 NC_003521.1 + 129725 0.66 0.821708
Target:  5'- cGCGG-CCCGUCGacgcgagcgcguCCG-CGCCGUCUu -3'
miRNA:   3'- aUGCUaGGGCGGC------------GGCuGCGGCAGAu -5'
13996 5' -60.9 NC_003521.1 + 179997 0.66 0.821708
Target:  5'- cGCGGg-CCGCCGUCGugGCauccuCGUCg- -3'
miRNA:   3'- aUGCUagGGCGGCGGCugCG-----GCAGau -5'
13996 5' -60.9 NC_003521.1 + 124466 0.66 0.821708
Target:  5'- cACGcgUUCGCCGCCGcgcuCGCgGUCc- -3'
miRNA:   3'- aUGCuaGGGCGGCGGCu---GCGgCAGau -5'
13996 5' -60.9 NC_003521.1 + 43828 0.66 0.821708
Target:  5'- --gGGUCagCCGCCGCCGGCcgcgggcCCGUCa- -3'
miRNA:   3'- augCUAG--GGCGGCGGCUGc------GGCAGau -5'
13996 5' -60.9 NC_003521.1 + 87914 0.66 0.821708
Target:  5'- aACGAcUCCUggcugGCCGCCG-CGCCGg--- -3'
miRNA:   3'- aUGCU-AGGG-----CGGCGGCuGCGGCagau -5'
13996 5' -60.9 NC_003521.1 + 187463 0.66 0.821708
Target:  5'- -uCGGUCugucggccccuCCGCCGCCG-CGCCGg--- -3'
miRNA:   3'- auGCUAG-----------GGCGGCGGCuGCGGCagau -5'
13996 5' -60.9 NC_003521.1 + 209212 0.66 0.821708
Target:  5'- cGCGGUggcCCUGCCaGCUGACccugccgaguaaGCCGUCUu -3'
miRNA:   3'- aUGCUA---GGGCGG-CGGCUG------------CGGCAGAu -5'
13996 5' -60.9 NC_003521.1 + 165684 0.66 0.8209
Target:  5'- gGC-AUCCCcaggucgGCCGCCGAaaGCCGUCc- -3'
miRNA:   3'- aUGcUAGGG-------CGGCGGCUg-CGGCAGau -5'
13996 5' -60.9 NC_003521.1 + 71257 0.66 0.8209
Target:  5'- cACGAUCCCGCCaacaucggcggagGCgGGgGCCG-Cg- -3'
miRNA:   3'- aUGCUAGGGCGG-------------CGgCUgCGGCaGau -5'
13996 5' -60.9 NC_003521.1 + 1142 0.66 0.81684
Target:  5'- cACGAa-CCGCUGCCGuccccgggagccacgGCGCCGcCUAc -3'
miRNA:   3'- aUGCUagGGCGGCGGC---------------UGCGGCaGAU- -5'
13996 5' -60.9 NC_003521.1 + 201370 0.66 0.81684
Target:  5'- cACGAa-CCGCUGCCGuccccgggagccacgGCGCCGcCUAc -3'
miRNA:   3'- aUGCUagGGCGGCGGC---------------UGCGGCaGAU- -5'
13996 5' -60.9 NC_003521.1 + 162418 0.66 0.813564
Target:  5'- -gUGAUCCCGUgGgCGAgGCCGacgUCUAc -3'
miRNA:   3'- auGCUAGGGCGgCgGCUgCGGC---AGAU- -5'
13996 5' -60.9 NC_003521.1 + 59367 0.66 0.813564
Target:  5'- gGCGcgCCaGCCGCUGgACGCCG-Cg- -3'
miRNA:   3'- aUGCuaGGgCGGCGGC-UGCGGCaGau -5'
13996 5' -60.9 NC_003521.1 + 179230 0.66 0.813564
Target:  5'- -uUGGUCCCGCCGCgggccuucUGGCGCCu---- -3'
miRNA:   3'- auGCUAGGGCGGCG--------GCUGCGGcagau -5'
13996 5' -60.9 NC_003521.1 + 167681 0.66 0.813564
Target:  5'- gGCGG-CgCCGCCGCCGcugccccCGCCGUg-- -3'
miRNA:   3'- aUGCUaG-GGCGGCGGCu------GCGGCAgau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.