miRNA display CGI


Results 1 - 20 of 55 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13997 3' -52.3 NC_003521.1 + 193504 1.11 0.00785
Target:  5'- gACGUUGGAGACACCUGGAAAGAGGACg -3'
miRNA:   3'- -UGCAACCUCUGUGGACCUUUCUCCUG- -5'
13997 3' -52.3 NC_003521.1 + 47280 0.8 0.510276
Target:  5'- uACGUUGaAGACACCUGGAAGGAGc-- -3'
miRNA:   3'- -UGCAACcUCUGUGGACCUUUCUCcug -5'
13997 3' -52.3 NC_003521.1 + 72410 0.79 0.549743
Target:  5'- aGCGgcGGAGGCACUgaGGAAGAGGGCg -3'
miRNA:   3'- -UGCaaCCUCUGUGGacCUUUCUCCUG- -5'
13997 3' -52.3 NC_003521.1 + 28059 0.78 0.590104
Target:  5'- gGCGggGGAGAgACaggaGGggGGAGGACg -3'
miRNA:   3'- -UGCaaCCUCUgUGga--CCuuUCUCCUG- -5'
13997 3' -52.3 NC_003521.1 + 17861 0.73 0.840896
Target:  5'- aGCGUgUGGAGAaggcaGCCaaggGGGGAGAGGAa -3'
miRNA:   3'- -UGCA-ACCUCUg----UGGa---CCUUUCUCCUg -5'
13997 3' -52.3 NC_003521.1 + 125700 0.72 0.892832
Target:  5'- gACGUagUGGAGACGCCggcGGucacgacGGGGGCg -3'
miRNA:   3'- -UGCA--ACCUCUGUGGa--CCuuu----CUCCUG- -5'
13997 3' -52.3 NC_003521.1 + 49642 0.72 0.892832
Target:  5'- gACGagGGAGACgaggaacaggAUCUGGAGAGGGGcCg -3'
miRNA:   3'- -UGCaaCCUCUG----------UGGACCUUUCUCCuG- -5'
13997 3' -52.3 NC_003521.1 + 72121 0.71 0.905686
Target:  5'- gGCGgUGGAGAuuCACCU-GAccGAGGACg -3'
miRNA:   3'- -UGCaACCUCU--GUGGAcCUuuCUCCUG- -5'
13997 3' -52.3 NC_003521.1 + 239090 0.71 0.905686
Target:  5'- uGCGgucgcgGGAGgaACGCgaGGGGAGGGGACc -3'
miRNA:   3'- -UGCaa----CCUC--UGUGgaCCUUUCUCCUG- -5'
13997 3' -52.3 NC_003521.1 + 32923 0.71 0.917604
Target:  5'- gGCGUaGGuGGCGCC-GGAGAGcccaAGGGCg -3'
miRNA:   3'- -UGCAaCCuCUGUGGaCCUUUC----UCCUG- -5'
13997 3' -52.3 NC_003521.1 + 48551 0.7 0.933693
Target:  5'- aACGgcgUGGAGACGCCgcUGGuGAAGGuGACg -3'
miRNA:   3'- -UGCa--ACCUCUGUGG--ACC-UUUCUcCUG- -5'
13997 3' -52.3 NC_003521.1 + 84774 0.7 0.938579
Target:  5'- gACGUUGuuGGCACCgccgaagcaGAGGGAGGGCa -3'
miRNA:   3'- -UGCAACcuCUGUGGac-------CUUUCUCCUG- -5'
13997 3' -52.3 NC_003521.1 + 77236 0.7 0.951821
Target:  5'- uACGggGGAcgacagGGCACacacggggGGAAGGGGGACa -3'
miRNA:   3'- -UGCaaCCU------CUGUGga------CCUUUCUCCUG- -5'
13997 3' -52.3 NC_003521.1 + 169213 0.69 0.955771
Target:  5'- gACGgaGGAGACAacaauCCcaGAAAGAGGACc -3'
miRNA:   3'- -UGCaaCCUCUGU-----GGacCUUUCUCCUG- -5'
13997 3' -52.3 NC_003521.1 + 169170 0.69 0.955771
Target:  5'- gAUGUUGGAGuACaugacaugACCcGGGAGGuGGACg -3'
miRNA:   3'- -UGCAACCUC-UG--------UGGaCCUUUCuCCUG- -5'
13997 3' -52.3 NC_003521.1 + 129870 0.69 0.959495
Target:  5'- gACGagUGGGuGACgGCCgGGGAGGAGGAg -3'
miRNA:   3'- -UGCa-ACCU-CUG-UGGaCCUUUCUCCUg -5'
13997 3' -52.3 NC_003521.1 + 15529 0.69 0.962998
Target:  5'- gGCGgcaugUGGcGaACGCgCUGGGAAGAGGGg -3'
miRNA:   3'- -UGCa----ACCuC-UGUG-GACCUUUCUCCUg -5'
13997 3' -52.3 NC_003521.1 + 13831 0.69 0.967538
Target:  5'- cCGUcGGAaaGCACCUGGAAugugacgaccggaggGGAGGAUg -3'
miRNA:   3'- uGCAaCCUc-UGUGGACCUU---------------UCUCCUG- -5'
13997 3' -52.3 NC_003521.1 + 135260 0.68 0.974898
Target:  5'- cACGgcGGcGGACGCCgacGAcgAGGAGGACg -3'
miRNA:   3'- -UGCaaCC-UCUGUGGac-CU--UUCUCCUG- -5'
13997 3' -52.3 NC_003521.1 + 4233 0.68 0.974898
Target:  5'- cCGggaGGAGG-ACCgagacgGGGAGGAGGACg -3'
miRNA:   3'- uGCaa-CCUCUgUGGa-----CCUUUCUCCUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.