Results 1 - 20 of 55 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13997 | 3' | -52.3 | NC_003521.1 | + | 651 | 0.66 | 0.995658 |
Target: 5'- gACGggccccggGGGGACGCg-GaGGAGGGGGGCu -3' miRNA: 3'- -UGCaa------CCUCUGUGgaC-CUUUCUCCUG- -5' |
|||||||
13997 | 3' | -52.3 | NC_003521.1 | + | 4233 | 0.68 | 0.974898 |
Target: 5'- cCGggaGGAGG-ACCgagacgGGGAGGAGGACg -3' miRNA: 3'- uGCaa-CCUCUgUGGa-----CCUUUCUCCUG- -5' |
|||||||
13997 | 3' | -52.3 | NC_003521.1 | + | 7148 | 0.67 | 0.985515 |
Target: 5'- cGCGgaGGAcGACgACgaGGAA-GAGGACa -3' miRNA: 3'- -UGCaaCCU-CUG-UGgaCCUUuCUCCUG- -5' |
|||||||
13997 | 3' | -52.3 | NC_003521.1 | + | 13651 | 0.66 | 0.9923 |
Target: 5'- gGCGgcGGAGGCgggagaagagGCUcGGAGAGGGuGGCg -3' miRNA: 3'- -UGCaaCCUCUG----------UGGaCCUUUCUC-CUG- -5' |
|||||||
13997 | 3' | -52.3 | NC_003521.1 | + | 13831 | 0.69 | 0.967538 |
Target: 5'- cCGUcGGAaaGCACCUGGAAugugacgaccggaggGGAGGAUg -3' miRNA: 3'- uGCAaCCUc-UGUGGACCUU---------------UCUCCUG- -5' |
|||||||
13997 | 3' | -52.3 | NC_003521.1 | + | 15529 | 0.69 | 0.962998 |
Target: 5'- gGCGgcaugUGGcGaACGCgCUGGGAAGAGGGg -3' miRNA: 3'- -UGCa----ACCuC-UGUG-GACCUUUCUCCUg -5' |
|||||||
13997 | 3' | -52.3 | NC_003521.1 | + | 17861 | 0.73 | 0.840896 |
Target: 5'- aGCGUgUGGAGAaggcaGCCaaggGGGGAGAGGAa -3' miRNA: 3'- -UGCA-ACCUCUg----UGGa---CCUUUCUCCUg -5' |
|||||||
13997 | 3' | -52.3 | NC_003521.1 | + | 28059 | 0.78 | 0.590104 |
Target: 5'- gGCGggGGAGAgACaggaGGggGGAGGACg -3' miRNA: 3'- -UGCaaCCUCUgUGga--CCuuUCUCCUG- -5' |
|||||||
13997 | 3' | -52.3 | NC_003521.1 | + | 32923 | 0.71 | 0.917604 |
Target: 5'- gGCGUaGGuGGCGCC-GGAGAGcccaAGGGCg -3' miRNA: 3'- -UGCAaCCuCUGUGGaCCUUUC----UCCUG- -5' |
|||||||
13997 | 3' | -52.3 | NC_003521.1 | + | 34330 | 0.66 | 0.994171 |
Target: 5'- aGCGUUGGAagcGGCGCa-GGgcGGAGGcCg -3' miRNA: 3'- -UGCAACCU---CUGUGgaCCuuUCUCCuG- -5' |
|||||||
13997 | 3' | -52.3 | NC_003521.1 | + | 35922 | 0.66 | 0.995658 |
Target: 5'- ---cUGGuGGGCGCCUGGuccucaacGGGGACg -3' miRNA: 3'- ugcaACC-UCUGUGGACCuuu-----CUCCUG- -5' |
|||||||
13997 | 3' | -52.3 | NC_003521.1 | + | 40972 | 0.66 | 0.995658 |
Target: 5'- gACGggccccggGGGGACGCg-GaGGAGGGGGGCu -3' miRNA: 3'- -UGCaa------CCUCUGUGgaC-CUUUCUCCUG- -5' |
|||||||
13997 | 3' | -52.3 | NC_003521.1 | + | 47280 | 0.8 | 0.510276 |
Target: 5'- uACGUUGaAGACACCUGGAAGGAGc-- -3' miRNA: 3'- -UGCAACcUCUGUGGACCUUUCUCcug -5' |
|||||||
13997 | 3' | -52.3 | NC_003521.1 | + | 48274 | 0.67 | 0.987146 |
Target: 5'- -aGagGGAGAagaCgGGAGAGAGGACg -3' miRNA: 3'- ugCaaCCUCUgugGaCCUUUCUCCUG- -5' |
|||||||
13997 | 3' | -52.3 | NC_003521.1 | + | 48551 | 0.7 | 0.933693 |
Target: 5'- aACGgcgUGGAGACGCCgcUGGuGAAGGuGACg -3' miRNA: 3'- -UGCa--ACCUCUGUGG--ACC-UUUCUcCUG- -5' |
|||||||
13997 | 3' | -52.3 | NC_003521.1 | + | 49642 | 0.72 | 0.892832 |
Target: 5'- gACGagGGAGACgaggaacaggAUCUGGAGAGGGGcCg -3' miRNA: 3'- -UGCaaCCUCUG----------UGGACCUUUCUCCuG- -5' |
|||||||
13997 | 3' | -52.3 | NC_003521.1 | + | 59646 | 0.66 | 0.993003 |
Target: 5'- gGCGUUGGuGcggcagacgcuggcGCGCCUGG-AGGAGcucaGACg -3' miRNA: 3'- -UGCAACCuC--------------UGUGGACCuUUCUC----CUG- -5' |
|||||||
13997 | 3' | -52.3 | NC_003521.1 | + | 65225 | 0.68 | 0.983731 |
Target: 5'- gACGcaGGAGAUacuggccgGCCUGGAuccgcgcgcgcAAGAGGAa -3' miRNA: 3'- -UGCaaCCUCUG--------UGGACCU-----------UUCUCCUg -5' |
|||||||
13997 | 3' | -52.3 | NC_003521.1 | + | 65344 | 0.67 | 0.986989 |
Target: 5'- ---aUGGAGucauCAUCUGGAAAGAgaaagauGGACu -3' miRNA: 3'- ugcaACCUCu---GUGGACCUUUCU-------CCUG- -5' |
|||||||
13997 | 3' | -52.3 | NC_003521.1 | + | 72121 | 0.71 | 0.905686 |
Target: 5'- gGCGgUGGAGAuuCACCU-GAccGAGGACg -3' miRNA: 3'- -UGCaACCUCU--GUGGAcCUuuCUCCUG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home