miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13998 3' -59.1 NC_003521.1 + 207655 0.66 0.898138
Target:  5'- -uUCGUGGaaCGuGGCCGAGGccgacgaggccaacgGCUUCGu -3'
miRNA:   3'- guAGCGCCagGC-CCGGCUCC---------------UGAAGU- -5'
13998 3' -59.1 NC_003521.1 + 167111 0.66 0.895672
Target:  5'- gGUCGCGGcCCGGGUCGcuGcGCUcCAc -3'
miRNA:   3'- gUAGCGCCaGGCCCGGCucC-UGAaGU- -5'
13998 3' -59.1 NC_003521.1 + 117488 0.66 0.895672
Target:  5'- --cCGCGGcgCUgGGGCCGucGGugUUCGg -3'
miRNA:   3'- guaGCGCCa-GG-CCCGGCu-CCugAAGU- -5'
13998 3' -59.1 NC_003521.1 + 38823 0.66 0.868537
Target:  5'- gGUCGCGGcgccguguUCCGaggaagagagccuGGCUGAGGACgaggCAu -3'
miRNA:   3'- gUAGCGCC--------AGGC-------------CCGGCUCCUGaa--GU- -5'
13998 3' -59.1 NC_003521.1 + 239050 0.66 0.868537
Target:  5'- gGUCGCGGcgccguguUCCGaggaagagagccuGGCUGAGGACgaggCAu -3'
miRNA:   3'- gUAGCGCC--------AGGC-------------CCGGCUCCUGaa--GU- -5'
13998 3' -59.1 NC_003521.1 + 104434 0.67 0.862143
Target:  5'- --aCGCGGcCCGcGGCCGAGGu----- -3'
miRNA:   3'- guaGCGCCaGGC-CCGGCUCCugaagu -5'
13998 3' -59.1 NC_003521.1 + 16641 0.67 0.854862
Target:  5'- uGUCGCGGcgaccgcuUUCGGGCCGAGauGCU-CAa -3'
miRNA:   3'- gUAGCGCC--------AGGCCCGGCUCc-UGAaGU- -5'
13998 3' -59.1 NC_003521.1 + 144900 0.67 0.853384
Target:  5'- --cUGCGGgcccacggcaugCCGguGGCCGAGGAgUUCAu -3'
miRNA:   3'- guaGCGCCa-----------GGC--CCGGCUCCUgAAGU- -5'
13998 3' -59.1 NC_003521.1 + 77725 0.67 0.8474
Target:  5'- gGUCGUGGcgCUGGcGcCCGAGGACg--- -3'
miRNA:   3'- gUAGCGCCa-GGCC-C-GGCUCCUGaagu -5'
13998 3' -59.1 NC_003521.1 + 95146 0.67 0.839763
Target:  5'- gCGUCGUGcGagagcaggaacUCgCGGGCCGAGGGCa--- -3'
miRNA:   3'- -GUAGCGC-C-----------AG-GCCCGGCUCCUGaagu -5'
13998 3' -59.1 NC_003521.1 + 111281 0.67 0.831958
Target:  5'- --gCGCGGcUCCcucGGGCUGGGGGCa--- -3'
miRNA:   3'- guaGCGCC-AGG---CCCGGCUCCUGaagu -5'
13998 3' -59.1 NC_003521.1 + 34646 0.67 0.831958
Target:  5'- -cUCGCGGcCCuGGCCGcccugcuccuGGGCUUCu -3'
miRNA:   3'- guAGCGCCaGGcCCGGCu---------CCUGAAGu -5'
13998 3' -59.1 NC_003521.1 + 83031 0.67 0.831958
Target:  5'- gAUCGCGGUCCGGGUucaacucgucgCGcAGGcACgcgaUCGa -3'
miRNA:   3'- gUAGCGCCAGGCCCG-----------GC-UCC-UGa---AGU- -5'
13998 3' -59.1 NC_003521.1 + 36426 0.67 0.82399
Target:  5'- -uUCGCGGUCggaGGGCCGcGGAg---- -3'
miRNA:   3'- guAGCGCCAGg--CCCGGCuCCUgaagu -5'
13998 3' -59.1 NC_003521.1 + 23092 0.67 0.82399
Target:  5'- gCGUcCGUGG-CCGGGCgGGGGGCc--- -3'
miRNA:   3'- -GUA-GCGCCaGGCCCGgCUCCUGaagu -5'
13998 3' -59.1 NC_003521.1 + 45945 0.68 0.815866
Target:  5'- -cUCGCGGUCgaagaGGGCCGuGGAg---- -3'
miRNA:   3'- guAGCGCCAGg----CCCGGCuCCUgaagu -5'
13998 3' -59.1 NC_003521.1 + 222229 0.68 0.799177
Target:  5'- --cCGCGG-CUGGGCCGcAGGAaccagUCGa -3'
miRNA:   3'- guaGCGCCaGGCCCGGC-UCCUga---AGU- -5'
13998 3' -59.1 NC_003521.1 + 94728 0.68 0.790627
Target:  5'- gGUCGCGGaaaucgauccgcUCCGGGuCCGAauGCUUCu -3'
miRNA:   3'- gUAGCGCC------------AGGCCC-GGCUccUGAAGu -5'
13998 3' -59.1 NC_003521.1 + 234825 0.69 0.746107
Target:  5'- uCGUCGgGGUUCGuGGCCGAGaGCaagUUCAc -3'
miRNA:   3'- -GUAGCgCCAGGC-CCGGCUCcUG---AAGU- -5'
13998 3' -59.1 NC_003521.1 + 156912 0.69 0.746107
Target:  5'- --gCGaCGGgCCGGaGCgGGGGACUUCGc -3'
miRNA:   3'- guaGC-GCCaGGCC-CGgCUCCUGAAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.