miRNA display CGI


Results 1 - 20 of 204 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13999 3' -55.5 NC_003521.1 + 137246 0.66 0.966903
Target:  5'- cCGGccGGGGCcgacGGcGGCAGCGggcAGAGCg -3'
miRNA:   3'- cGCUcuCCCCG----UCaUCGUCGU---UCUCG- -5'
13999 3' -55.5 NC_003521.1 + 131057 0.66 0.966903
Target:  5'- gGCGGGccucuGGacGCGGUGGCGGCGAccGCg -3'
miRNA:   3'- -CGCUCu----CCc-CGUCAUCGUCGUUcuCG- -5'
13999 3' -55.5 NC_003521.1 + 168422 0.66 0.966903
Target:  5'- -aGGGcGGGcGGCAGggccGCGGCGGcGGGCg -3'
miRNA:   3'- cgCUC-UCC-CCGUCau--CGUCGUU-CUCG- -5'
13999 3' -55.5 NC_003521.1 + 86741 0.66 0.966903
Target:  5'- cGCGGaacauGAGGaGGCug-GGCAccgagaggcGCGAGAGCu -3'
miRNA:   3'- -CGCU-----CUCC-CCGucaUCGU---------CGUUCUCG- -5'
13999 3' -55.5 NC_003521.1 + 124949 0.66 0.966903
Target:  5'- cCGuGGGuGGGCAcGU-GCAGCAGGAu- -3'
miRNA:   3'- cGCuCUC-CCCGU-CAuCGUCGUUCUcg -5'
13999 3' -55.5 NC_003521.1 + 99404 0.66 0.966903
Target:  5'- aGCGAGAcGGGCuuUAaaGGCAGGuGCa -3'
miRNA:   3'- -CGCUCUcCCCGucAUcgUCGUUCuCG- -5'
13999 3' -55.5 NC_003521.1 + 55970 0.66 0.966903
Target:  5'- uGUGccuGGGGucGGCAGUcgcAGCGGCGcGAGUa -3'
miRNA:   3'- -CGCu--CUCC--CCGUCA---UCGUCGUuCUCG- -5'
13999 3' -55.5 NC_003521.1 + 236167 0.66 0.966594
Target:  5'- gGCGGGAccuagcggacgauGGGuGgGGUGGCAGgAaagccgacGGAGCg -3'
miRNA:   3'- -CGCUCU-------------CCC-CgUCAUCGUCgU--------UCUCG- -5'
13999 3' -55.5 NC_003521.1 + 49668 0.66 0.963721
Target:  5'- -gGAGAGGGGCcg-GGCgAGCGc-GGCg -3'
miRNA:   3'- cgCUCUCCCCGucaUCG-UCGUucUCG- -5'
13999 3' -55.5 NC_003521.1 + 40415 0.66 0.963721
Target:  5'- cGCGGGcgugcaGGGaGGCcgaAGcGGCGGCcGGAGCc -3'
miRNA:   3'- -CGCUC------UCC-CCG---UCaUCGUCGuUCUCG- -5'
13999 3' -55.5 NC_003521.1 + 86609 0.66 0.963721
Target:  5'- aGCGcucGuGGuGGCGGUAG-AGCAGGaAGCc -3'
miRNA:   3'- -CGCu--CuCC-CCGUCAUCgUCGUUC-UCG- -5'
13999 3' -55.5 NC_003521.1 + 116463 0.66 0.963721
Target:  5'- cGCGGccguGGuGGGaCAcGUGGCGGCGaugaAGAGCg -3'
miRNA:   3'- -CGCUc---UC-CCC-GU-CAUCGUCGU----UCUCG- -5'
13999 3' -55.5 NC_003521.1 + 93 0.66 0.963721
Target:  5'- cGCGGGcgugcaGGGaGGCcgaAGcGGCGGCcGGAGCc -3'
miRNA:   3'- -CGCUC------UCC-CCG---UCaUCGUCGuUCUCG- -5'
13999 3' -55.5 NC_003521.1 + 240642 0.66 0.963721
Target:  5'- cGCGGGcgugcaGGGaGGCcgaAGcGGCGGCcGGAGCc -3'
miRNA:   3'- -CGCUC------UCC-CCG---UCaUCGUCGuUCUCG- -5'
13999 3' -55.5 NC_003521.1 + 121116 0.66 0.962727
Target:  5'- gGUGGGguguucgcuguacuGGGGGCcgc-GCAGCAuGAGCa -3'
miRNA:   3'- -CGCUC--------------UCCCCGucauCGUCGUuCUCG- -5'
13999 3' -55.5 NC_003521.1 + 119021 0.66 0.961713
Target:  5'- gGCGAacacggauucggauaGGGcGGGCGGcgucgGGguGCuGGAGCg -3'
miRNA:   3'- -CGCU---------------CUC-CCCGUCa----UCguCGuUCUCG- -5'
13999 3' -55.5 NC_003521.1 + 93898 0.66 0.960332
Target:  5'- uCGAGGGcauGGGCguggcuGGUcGCGGCAAGcGGCg -3'
miRNA:   3'- cGCUCUC---CCCG------UCAuCGUCGUUC-UCG- -5'
13999 3' -55.5 NC_003521.1 + 92075 0.66 0.960332
Target:  5'- gGCGGaccGGGGGuCGGgGGguGCGcAGGGCg -3'
miRNA:   3'- -CGCUc--UCCCC-GUCaUCguCGU-UCUCG- -5'
13999 3' -55.5 NC_003521.1 + 83315 0.66 0.960332
Target:  5'- uGCGAcAGGGG--GUAGCGGUcGGuGCa -3'
miRNA:   3'- -CGCUcUCCCCguCAUCGUCGuUCuCG- -5'
13999 3' -55.5 NC_003521.1 + 166899 0.66 0.960332
Target:  5'- gGUGAGGaacacgggcacGGGGCAGaGGUAGacGGGGCc -3'
miRNA:   3'- -CGCUCU-----------CCCCGUCaUCGUCguUCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.