miRNA display CGI


Results 21 - 40 of 381 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13999 5' -62 NC_003521.1 + 153095 0.66 0.807113
Target:  5'- cGGGCUUCGuCUGgCACCucaaccgGGUCUGCa -3'
miRNA:   3'- -CCUGAGGCuGGCgGUGGca-----CCGGGCG- -5'
13999 5' -62 NC_003521.1 + 100942 0.66 0.807113
Target:  5'- uGGACgcgCUGACCGagcugUACCGcGaCCCGCa -3'
miRNA:   3'- -CCUGa--GGCUGGCg----GUGGCaCcGGGCG- -5'
13999 5' -62 NC_003521.1 + 162670 0.66 0.807113
Target:  5'- aGGAUgugccucguUCgCGGCCGCCGCCGcuaacGcGCCCa- -3'
miRNA:   3'- -CCUG---------AG-GCUGGCGGUGGCa----C-CGGGcg -5'
13999 5' -62 NC_003521.1 + 148900 0.66 0.807113
Target:  5'- cGACgCCGAggagCGCCGCCGcGGCaucgagcaCCGCa -3'
miRNA:   3'- cCUGaGGCUg---GCGGUGGCaCCG--------GGCG- -5'
13999 5' -62 NC_003521.1 + 54515 0.66 0.807113
Target:  5'- uGGACcaggaUCUGcACggCGCCGCUGgGGCCCGg -3'
miRNA:   3'- -CCUG-----AGGC-UG--GCGGUGGCaCCGGGCg -5'
13999 5' -62 NC_003521.1 + 90324 0.66 0.807113
Target:  5'- aGGGCcCCG-CCGgCGCCGUaaaagcugaagGGCCC-Ca -3'
miRNA:   3'- -CCUGaGGCuGGCgGUGGCA-----------CCGGGcG- -5'
13999 5' -62 NC_003521.1 + 59948 0.66 0.807113
Target:  5'- uGGACuucUCCGucuAUCGCCACaac-GCCCGCc -3'
miRNA:   3'- -CCUG---AGGC---UGGCGGUGgcacCGGGCG- -5'
13999 5' -62 NC_003521.1 + 183663 0.66 0.807113
Target:  5'- cGGcACgccgaCGACCuGCCGCgCGUGGCCgacgagaccuauCGCu -3'
miRNA:   3'- -CC-UGag---GCUGG-CGGUG-GCACCGG------------GCG- -5'
13999 5' -62 NC_003521.1 + 27237 0.66 0.807113
Target:  5'- uGGuCaucgCCGGCUGCUA-CGUGGCgCUGCu -3'
miRNA:   3'- -CCuGa---GGCUGGCGGUgGCACCG-GGCG- -5'
13999 5' -62 NC_003521.1 + 216661 0.66 0.807113
Target:  5'- aGACUCCGcAUCuCCGCgGUGG-UCGCg -3'
miRNA:   3'- cCUGAGGC-UGGcGGUGgCACCgGGCG- -5'
13999 5' -62 NC_003521.1 + 151087 0.66 0.807113
Target:  5'- cGGCUgCCGucACCGCCcCCGU-GCCCa- -3'
miRNA:   3'- cCUGA-GGC--UGGCGGuGGCAcCGGGcg -5'
13999 5' -62 NC_003521.1 + 200359 0.66 0.806301
Target:  5'- cGGACacaucuaUCCGuuCCGCgACCG-GGCUagaGCg -3'
miRNA:   3'- -CCUG-------AGGCu-GGCGgUGGCaCCGGg--CG- -5'
13999 5' -62 NC_003521.1 + 184813 0.66 0.805488
Target:  5'- cGcCUCCGACUGguggguggagaaCGCCGUGGaCCgGCu -3'
miRNA:   3'- cCuGAGGCUGGCg-----------GUGGCACC-GGgCG- -5'
13999 5' -62 NC_003521.1 + 127335 0.66 0.802224
Target:  5'- cGGCUgCCGGuCgGCCAcgaucugcacgcccuCCGUGGUgCGCg -3'
miRNA:   3'- cCUGA-GGCU-GgCGGU---------------GGCACCGgGCG- -5'
13999 5' -62 NC_003521.1 + 6167 0.66 0.798939
Target:  5'- cGGCUCCGGCUccugGCUGuuG-GGUCCGUc -3'
miRNA:   3'- cCUGAGGCUGG----CGGUggCaCCGGGCG- -5'
13999 5' -62 NC_003521.1 + 202630 0.66 0.798939
Target:  5'- cGACcUCGACCGCgagCACUGggagcGGCcCCGCu -3'
miRNA:   3'- cCUGaGGCUGGCG---GUGGCa----CCG-GGCG- -5'
13999 5' -62 NC_003521.1 + 103659 0.66 0.798939
Target:  5'- cGGCggCGGCCGCUgcgGCCGcGGCCaugGCg -3'
miRNA:   3'- cCUGagGCUGGCGG---UGGCaCCGGg--CG- -5'
13999 5' -62 NC_003521.1 + 125138 0.66 0.798939
Target:  5'- cGGACaCCGGCUGuuCCGCC-UGG-CCGCc -3'
miRNA:   3'- -CCUGaGGCUGGC--GGUGGcACCgGGCG- -5'
13999 5' -62 NC_003521.1 + 128372 0.66 0.798939
Target:  5'- cGGGCgcgCCcACCaggGCCGCC-UGGgCCGCc -3'
miRNA:   3'- -CCUGa--GGcUGG---CGGUGGcACCgGGCG- -5'
13999 5' -62 NC_003521.1 + 116609 0.66 0.798939
Target:  5'- cGGGC-CCGGUCGCgGgCCagaaagGGCCCGCu -3'
miRNA:   3'- -CCUGaGGCUGGCGgU-GGca----CCGGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.