miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
140 5' -55 AC_000006.1 + 13297 0.65 0.613471
Target:  5'- gCCGCGGCga-CAGCgCCAcgaccgGcAGCGGGg -3'
miRNA:   3'- aGGCGUUGaagGUCG-GGUa-----C-UCGUCC- -5'
140 5' -55 AC_000006.1 + 11488 0.66 0.579306
Target:  5'- aCCGCAACgaccgcaUCCacaAGgCCGUGAGCGc- -3'
miRNA:   3'- aGGCGUUGa------AGG---UCgGGUACUCGUcc -5'
140 5' -55 AC_000006.1 + 19531 0.67 0.538887
Target:  5'- -gCGgAAgUUCCacucguagguguaggAGCCCggGAGCAGGa -3'
miRNA:   3'- agGCgUUgAAGG---------------UCGGGuaCUCGUCC- -5'
140 5' -55 AC_000006.1 + 29828 0.67 0.534452
Target:  5'- -gCGCAGCa-CCAGUCgAUGAgcuGCAGGa -3'
miRNA:   3'- agGCGUUGaaGGUCGGgUACU---CGUCC- -5'
140 5' -55 AC_000006.1 + 7284 0.67 0.512478
Target:  5'- cCCGCAAUUUCauGCCgc-GAGCAGGc -3'
miRNA:   3'- aGGCGUUGAAGguCGGguaCUCGUCC- -5'
140 5' -55 AC_000006.1 + 6920 0.68 0.469725
Target:  5'- cUCGuCAucCUUCCAGUacuCCcgGAGCGGGa -3'
miRNA:   3'- aGGC-GUu-GAAGGUCG---GGuaCUCGUCC- -5'
140 5' -55 AC_000006.1 + 389 0.68 0.469725
Target:  5'- cUCgGUAAauaUUCC-GCCC-UGGGCGGGa -3'
miRNA:   3'- -AGgCGUUg--AAGGuCGGGuACUCGUCC- -5'
140 5' -55 AC_000006.1 + 8130 0.68 0.438888
Target:  5'- gUCGCGGagaUCCAgGUCCggGGGCAGGg -3'
miRNA:   3'- aGGCGUUga-AGGU-CGGGuaCUCGUCC- -5'
140 5' -55 AC_000006.1 + 20363 0.69 0.428868
Target:  5'- cUCCaGCAACUUCauGUCCAUGGGCGc- -3'
miRNA:   3'- -AGG-CGUUGAAGguCGGGUACUCGUcc -5'
140 5' -55 AC_000006.1 + 22588 0.69 0.399639
Target:  5'- cCCGCugauACUUUCGGCgCUugGUGGGCAGa -3'
miRNA:   3'- aGGCGu---UGAAGGUCG-GG--UACUCGUCc -5'
140 5' -55 AC_000006.1 + 23614 0.7 0.380874
Target:  5'- cCCGCGACccCCAgGCCCugGAGCAGcGg -3'
miRNA:   3'- aGGCGUUGaaGGU-CGGGuaCUCGUC-C- -5'
140 5' -55 AC_000006.1 + 3563 0.7 0.380874
Target:  5'- uUCUGaCGAacUCCGGCCCAUccuGGCAGGc -3'
miRNA:   3'- -AGGC-GUUgaAGGUCGGGUAc--UCGUCC- -5'
140 5' -55 AC_000006.1 + 15163 0.7 0.379951
Target:  5'- gUCCGCGgccACUUCCGcGCuCCGUGGggcgcuuacaagcGCGGGc -3'
miRNA:   3'- -AGGCGU---UGAAGGU-CG-GGUACU-------------CGUCC- -5'
140 5' -55 AC_000006.1 + 24384 0.7 0.345149
Target:  5'- gUCUGCAACccCCAGCUCcUGAGCGa- -3'
miRNA:   3'- -AGGCGUUGaaGGUCGGGuACUCGUcc -5'
140 5' -55 AC_000006.1 + 3812 0.7 0.336602
Target:  5'- gCgGCucagGGCUUCCAGCUCGgccAGCAGGg -3'
miRNA:   3'- aGgCG----UUGAAGGUCGGGUac-UCGUCC- -5'
140 5' -55 AC_000006.1 + 20344 0.7 0.336602
Target:  5'- aUgGCAcgGCUgUCUGGCCgAUGAGCGGGu -3'
miRNA:   3'- aGgCGU--UGA-AGGUCGGgUACUCGUCC- -5'
140 5' -55 AC_000006.1 + 8332 0.75 0.176758
Target:  5'- gCgGCAGCggcggUUCCGGCCCcgcGGGCAGGg -3'
miRNA:   3'- aGgCGUUG-----AAGGUCGGGua-CUCGUCC- -5'
140 5' -55 AC_000006.1 + 20121 1.1 0.000451
Target:  5'- uUCCGCAACUUCCAGCCCAUGAGCAGGc -3'
miRNA:   3'- -AGGCGUUGAAGGUCGGGUACUCGUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.