miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1400 5' -58.8 NC_001335.1 + 1687 0.66 0.524333
Target:  5'- cGAGUUCaacggcgcuccgacaGCCGGCCUCGgCaUGUAcgGCGg -3'
miRNA:   3'- -CUCAAG---------------UGGCCGGAGCgG-GCGU--UGCa -5'
1400 5' -58.8 NC_001335.1 + 5660 0.66 0.519142
Target:  5'- cGGcgCACCGGagaCUaguaucgacacgaCGCCCGCAAUGa -3'
miRNA:   3'- cUCaaGUGGCCg--GA-------------GCGGGCGUUGCa -5'
1400 5' -58.8 NC_001335.1 + 43747 0.66 0.499609
Target:  5'- uGGUUCaACUGGCUgaCGCuUCGCAGCGg -3'
miRNA:   3'- cUCAAG-UGGCCGGa-GCG-GGCGUUGCa -5'
1400 5' -58.8 NC_001335.1 + 42390 0.66 0.479408
Target:  5'- uGGUUCAUCaGCCgggUGCCgCGCAGCu- -3'
miRNA:   3'- cUCAAGUGGcCGGa--GCGG-GCGUUGca -5'
1400 5' -58.8 NC_001335.1 + 40600 0.67 0.469459
Target:  5'- aAGUugUCAgCGGCCUUGCUgacguucuccgaUGCGACGUc -3'
miRNA:   3'- cUCA--AGUgGCCGGAGCGG------------GCGUUGCA- -5'
1400 5' -58.8 NC_001335.1 + 3856 0.67 0.449884
Target:  5'- cGAGUUCACCGGaucCCUUgGgCUGCAGCc- -3'
miRNA:   3'- -CUCAAGUGGCC---GGAG-CgGGCGUUGca -5'
1400 5' -58.8 NC_001335.1 + 23837 0.67 0.449884
Target:  5'- ---aUCACCGGgCUCGUCggagcuggaggCGCAGCGg -3'
miRNA:   3'- cucaAGUGGCCgGAGCGG-----------GCGUUGCa -5'
1400 5' -58.8 NC_001335.1 + 15030 0.67 0.430767
Target:  5'- cGGUccUCAUCGGCCU-GUCCGaCGAUGUg -3'
miRNA:   3'- cUCA--AGUGGCCGGAgCGGGC-GUUGCA- -5'
1400 5' -58.8 NC_001335.1 + 6972 0.67 0.421388
Target:  5'- -cGUUCACC-GCCgCGCCUGCuuGGCGg -3'
miRNA:   3'- cuCAAGUGGcCGGaGCGGGCG--UUGCa -5'
1400 5' -58.8 NC_001335.1 + 4610 0.68 0.367808
Target:  5'- uGGGUcCACgacaUGGCCcgCGCUCGCGACGg -3'
miRNA:   3'- -CUCAaGUG----GCCGGa-GCGGGCGUUGCa -5'
1400 5' -58.8 NC_001335.1 + 27315 0.7 0.282329
Target:  5'- ---gUCACgGGCCUCGUCCuuCGACGUg -3'
miRNA:   3'- cucaAGUGgCCGGAGCGGGc-GUUGCA- -5'
1400 5' -58.8 NC_001335.1 + 38279 0.72 0.207877
Target:  5'- uAGUUCcgcucgGCCGGCCa-GCCCGCGACu- -3'
miRNA:   3'- cUCAAG------UGGCCGGagCGGGCGUUGca -5'
1400 5' -58.8 NC_001335.1 + 40132 1.06 0.000686
Target:  5'- gGAGUUCACCGGCCUCGCCCGCAACGUc -3'
miRNA:   3'- -CUCAAGUGGCCGGAGCGGGCGUUGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.