Results 21 - 28 of 28 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
|
R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 14000 | 3' | -50.7 | NC_003521.1 | + | 186976 | 0.66 | 0.998458 |
|
Target: 5'- cGGCCGAggaCGCc-GUCG-CGCGGAa -3' miRNA: 3'- cCCGGUUaa-GCGauUAGCaGUGCCUa -5' |
|||||||
| 14000 | 3' | -50.7 | NC_003521.1 | + | 191640 | 1.08 | 0.015835 |
|
Target: 5'- cGGGCCAAUUCGCUAAUCGUCACGGAUc -3' miRNA: 3'- -CCCGGUUAAGCGAUUAGCAGUGCCUA- -5' |
|||||||
| 14000 | 3' | -50.7 | NC_003521.1 | + | 196330 | 0.68 | 0.994332 |
|
Target: 5'- uGGGCCGGUUguugCGCUG--CGUCACguuGGAc -3' miRNA: 3'- -CCCGGUUAA----GCGAUuaGCAGUG---CCUa -5' |
|||||||
| 14000 | 3' | -50.7 | NC_003521.1 | + | 196468 | 0.68 | 0.991394 |
|
Target: 5'- uGGGCCGcagccccaGCg---CGUCGCGGAUg -3' miRNA: 3'- -CCCGGUuaag----CGauuaGCAGUGCCUA- -5' |
|||||||
| 14000 | 3' | -50.7 | NC_003521.1 | + | 200338 | 0.73 | 0.917402 |
|
Target: 5'- cGGGCCG----GCgGGUCGUCGCGGGg -3' miRNA: 3'- -CCCGGUuaagCGaUUAGCAGUGCCUa -5' |
|||||||
| 14000 | 3' | -50.7 | NC_003521.1 | + | 223466 | 0.69 | 0.990183 |
|
Target: 5'- uGGGCCGccgCGCcgg-CGUCACGGc- -3' miRNA: 3'- -CCCGGUuaaGCGauuaGCAGUGCCua -5' |
|||||||
| 14000 | 3' | -50.7 | NC_003521.1 | + | 225631 | 0.7 | 0.978547 |
|
Target: 5'- -cGCCGAUUCGuCUAAcuuucccuuggaauuUCGUgGCGGAUa -3' miRNA: 3'- ccCGGUUAAGC-GAUU---------------AGCAgUGCCUA- -5' |
|||||||
| 14000 | 3' | -50.7 | NC_003521.1 | + | 240659 | 0.73 | 0.917402 |
|
Target: 5'- cGGGCCG----GCgGGUCGUCGCGGGg -3' miRNA: 3'- -CCCGGUuaagCGaUUAGCAGUGCCUa -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home