Results 21 - 28 of 28 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14000 | 3' | -50.7 | NC_003521.1 | + | 34405 | 0.72 | 0.937614 |
Target: 5'- cGGGCCAGgugaggaucaGCUGggCGUCGCGGu- -3' miRNA: 3'- -CCCGGUUaag-------CGAUuaGCAGUGCCua -5' |
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14000 | 3' | -50.7 | NC_003521.1 | + | 110 | 0.73 | 0.917402 |
Target: 5'- cGGGCCG----GCgGGUCGUCGCGGGg -3' miRNA: 3'- -CCCGGUuaagCGaUUAGCAGUGCCUa -5' |
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14000 | 3' | -50.7 | NC_003521.1 | + | 200338 | 0.73 | 0.917402 |
Target: 5'- cGGGCCG----GCgGGUCGUCGCGGGg -3' miRNA: 3'- -CCCGGUuaagCGaUUAGCAGUGCCUa -5' |
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14000 | 3' | -50.7 | NC_003521.1 | + | 240659 | 0.73 | 0.917402 |
Target: 5'- cGGGCCG----GCgGGUCGUCGCGGGg -3' miRNA: 3'- -CCCGGUuaagCGaUUAGCAGUGCCUa -5' |
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14000 | 3' | -50.7 | NC_003521.1 | + | 118498 | 0.74 | 0.86362 |
Target: 5'- cGGCCGGUUCGUucgaggUAAUCGgugUACGGGUg -3' miRNA: 3'- cCCGGUUAAGCG------AUUAGCa--GUGCCUA- -5' |
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14000 | 3' | -50.7 | NC_003521.1 | + | 168832 | 0.76 | 0.805433 |
Target: 5'- uGGGCCccagcgaGCUGcgCGUCACGGAc -3' miRNA: 3'- -CCCGGuuaag--CGAUuaGCAGUGCCUa -5' |
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14000 | 3' | -50.7 | NC_003521.1 | + | 36948 | 0.77 | 0.729586 |
Target: 5'- uGGGCCcga-CGCUGGUCGUCgcaGCGGAg -3' miRNA: 3'- -CCCGGuuaaGCGAUUAGCAG---UGCCUa -5' |
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14000 | 3' | -50.7 | NC_003521.1 | + | 191640 | 1.08 | 0.015835 |
Target: 5'- cGGGCCAAUUCGCUAAUCGUCACGGAUc -3' miRNA: 3'- -CCCGGUUAAGCGAUUAGCAGUGCCUA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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