miRNA display CGI


Results 21 - 28 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14000 3' -50.7 NC_003521.1 + 34405 0.72 0.937614
Target:  5'- cGGGCCAGgugaggaucaGCUGggCGUCGCGGu- -3'
miRNA:   3'- -CCCGGUUaag-------CGAUuaGCAGUGCCua -5'
14000 3' -50.7 NC_003521.1 + 110 0.73 0.917402
Target:  5'- cGGGCCG----GCgGGUCGUCGCGGGg -3'
miRNA:   3'- -CCCGGUuaagCGaUUAGCAGUGCCUa -5'
14000 3' -50.7 NC_003521.1 + 200338 0.73 0.917402
Target:  5'- cGGGCCG----GCgGGUCGUCGCGGGg -3'
miRNA:   3'- -CCCGGUuaagCGaUUAGCAGUGCCUa -5'
14000 3' -50.7 NC_003521.1 + 240659 0.73 0.917402
Target:  5'- cGGGCCG----GCgGGUCGUCGCGGGg -3'
miRNA:   3'- -CCCGGUuaagCGaUUAGCAGUGCCUa -5'
14000 3' -50.7 NC_003521.1 + 118498 0.74 0.86362
Target:  5'- cGGCCGGUUCGUucgaggUAAUCGgugUACGGGUg -3'
miRNA:   3'- cCCGGUUAAGCG------AUUAGCa--GUGCCUA- -5'
14000 3' -50.7 NC_003521.1 + 168832 0.76 0.805433
Target:  5'- uGGGCCccagcgaGCUGcgCGUCACGGAc -3'
miRNA:   3'- -CCCGGuuaag--CGAUuaGCAGUGCCUa -5'
14000 3' -50.7 NC_003521.1 + 36948 0.77 0.729586
Target:  5'- uGGGCCcga-CGCUGGUCGUCgcaGCGGAg -3'
miRNA:   3'- -CCCGGuuaaGCGAUUAGCAG---UGCCUa -5'
14000 3' -50.7 NC_003521.1 + 191640 1.08 0.015835
Target:  5'- cGGGCCAAUUCGCUAAUCGUCACGGAUc -3'
miRNA:   3'- -CCCGGUUAAGCGAUUAGCAGUGCCUA- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.