miRNA display CGI


Results 21 - 40 of 457 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14000 5' -53.5 NC_003521.1 + 123630 0.66 0.991989
Target:  5'- aGCAGCgGCGugAugaugCGCAGCgcaaacaGGUUCa -3'
miRNA:   3'- -CGUCGgCGCugUua---GCGUUG-------UCAGGg -5'
14000 5' -53.5 NC_003521.1 + 165040 0.66 0.991989
Target:  5'- uGCuGCCGCGGCGucUGCAccuggagGCGG-CCUu -3'
miRNA:   3'- -CGuCGGCGCUGUuaGCGU-------UGUCaGGG- -5'
14000 5' -53.5 NC_003521.1 + 127981 0.66 0.991776
Target:  5'- gGCAGCucggccaugacgccCGCcACGgaauccgggggGUCGCGGCcGUCCCa -3'
miRNA:   3'- -CGUCG--------------GCGcUGU-----------UAGCGUUGuCAGGG- -5'
14000 5' -53.5 NC_003521.1 + 214820 0.66 0.990993
Target:  5'- cCGGgCGCGGCGA---CGGCGGUUCCa -3'
miRNA:   3'- cGUCgGCGCUGUUagcGUUGUCAGGG- -5'
14000 5' -53.5 NC_003521.1 + 203869 0.66 0.990993
Target:  5'- cGCuccGCUGCGACGAccaGCGuCGGgCCCa -3'
miRNA:   3'- -CGu--CGGCGCUGUUag-CGUuGUCaGGG- -5'
14000 5' -53.5 NC_003521.1 + 133017 0.66 0.990993
Target:  5'- aCAGCCGCcaccggcACAGUauCAGCAGcCCCc -3'
miRNA:   3'- cGUCGGCGc------UGUUAgcGUUGUCaGGG- -5'
14000 5' -53.5 NC_003521.1 + 151293 0.66 0.990993
Target:  5'- cGCAGCCuggguucCGACGcgCGCAagGCGG-CCa -3'
miRNA:   3'- -CGUCGGc------GCUGUuaGCGU--UGUCaGGg -5'
14000 5' -53.5 NC_003521.1 + 27521 0.66 0.990993
Target:  5'- uGCGGCCcgagGCGcccACGGUgGCGuagACGGUCuCCa -3'
miRNA:   3'- -CGUCGG----CGC---UGUUAgCGU---UGUCAG-GG- -5'
14000 5' -53.5 NC_003521.1 + 34519 0.66 0.990993
Target:  5'- aGCGGCCGCGggccgagacgcGCGAgcgGCGACAGaguucggCCUu -3'
miRNA:   3'- -CGUCGGCGC-----------UGUUag-CGUUGUCa------GGG- -5'
14000 5' -53.5 NC_003521.1 + 8543 0.66 0.990993
Target:  5'- cGUGGgCGCGACGAcauccacCGUcACGGUCCg -3'
miRNA:   3'- -CGUCgGCGCUGUUa------GCGuUGUCAGGg -5'
14000 5' -53.5 NC_003521.1 + 196613 0.66 0.990993
Target:  5'- aGCAGcCCGuUGAgGAUgCGCGuccGCAGggugCCCg -3'
miRNA:   3'- -CGUC-GGC-GCUgUUA-GCGU---UGUCa---GGG- -5'
14000 5' -53.5 NC_003521.1 + 77772 0.66 0.990993
Target:  5'- uGUAGUCGCGGCAggCGCAcucGUCa- -3'
miRNA:   3'- -CGUCGGCGCUGUuaGCGUuguCAGgg -5'
14000 5' -53.5 NC_003521.1 + 111241 0.66 0.990993
Target:  5'- cGCGGCCggcGCGGCGcggCGgAGCAG-CCa -3'
miRNA:   3'- -CGUCGG---CGCUGUua-GCgUUGUCaGGg -5'
14000 5' -53.5 NC_003521.1 + 49566 0.66 0.990993
Target:  5'- aGCAccaccuGCCGCGugGGcCGCGGCGccgccuccUCCCa -3'
miRNA:   3'- -CGU------CGGCGCugUUaGCGUUGUc-------AGGG- -5'
14000 5' -53.5 NC_003521.1 + 48513 0.66 0.990993
Target:  5'- cGguGCCGcCGACGccgcuacCGCGgACGGUgCCg -3'
miRNA:   3'- -CguCGGC-GCUGUua-----GCGU-UGUCAgGG- -5'
14000 5' -53.5 NC_003521.1 + 198606 0.66 0.990993
Target:  5'- -aGGuuGUGguGCGAUUGCGACAGccgcuggCCCa -3'
miRNA:   3'- cgUCggCGC--UGUUAGCGUUGUCa------GGG- -5'
14000 5' -53.5 NC_003521.1 + 118270 0.66 0.990876
Target:  5'- gGUAGCCggcaccaGCGGCGGUaGCAGCAGcacuaCCa -3'
miRNA:   3'- -CGUCGG-------CGCUGUUAgCGUUGUCag---GG- -5'
14000 5' -53.5 NC_003521.1 + 199503 0.66 0.990876
Target:  5'- uCGGCgGCGAUGAgCGCGACuGUggcgaagCCCa -3'
miRNA:   3'- cGUCGgCGCUGUUaGCGUUGuCA-------GGG- -5'
14000 5' -53.5 NC_003521.1 + 150404 0.66 0.990276
Target:  5'- uCGGCgGCGACGagcccggacccgucuGUCGCGuGCAGgagagcgcgCCCg -3'
miRNA:   3'- cGUCGgCGCUGU---------------UAGCGU-UGUCa--------GGG- -5'
14000 5' -53.5 NC_003521.1 + 206591 0.66 0.989774
Target:  5'- -aGGCCcCGGCuAUCGCGACAuGUCg- -3'
miRNA:   3'- cgUCGGcGCUGuUAGCGUUGU-CAGgg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.