miRNA display CGI


Results 1 - 20 of 328 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14001 3' -59 NC_003521.1 + 226353 0.66 0.882375
Target:  5'- cCCGCGgguaGCGCCGCGggagcggcggcugacGCCGCCG-CAg -3'
miRNA:   3'- uGGUGCg---UGCGGUGC---------------UGGCGGUaGUa -5'
14001 3' -59 NC_003521.1 + 213372 0.66 0.882375
Target:  5'- aGCCugGCGCucacggccgaauucgGCCugGGCUGCCu---- -3'
miRNA:   3'- -UGGugCGUG---------------CGGugCUGGCGGuagua -5'
14001 3' -59 NC_003521.1 + 22789 0.66 0.879672
Target:  5'- uACCuGCGgACGCCGCcGCCGCCc---- -3'
miRNA:   3'- -UGG-UGCgUGCGGUGcUGGCGGuagua -5'
14001 3' -59 NC_003521.1 + 116784 0.66 0.879672
Target:  5'- cGCCGCgGCACGCUggccgucuACGGCCGCgAc--- -3'
miRNA:   3'- -UGGUG-CGUGCGG--------UGCUGGCGgUagua -5'
14001 3' -59 NC_003521.1 + 108626 0.66 0.879672
Target:  5'- cACguUGUugGCCagGCGGCUGCCgAUCAg -3'
miRNA:   3'- -UGguGCGugCGG--UGCUGGCGG-UAGUa -5'
14001 3' -59 NC_003521.1 + 148872 0.66 0.879672
Target:  5'- cGCCcuCGC-CGCCACGGgguCCGCCGcCGg -3'
miRNA:   3'- -UGGu-GCGuGCGGUGCU---GGCGGUaGUa -5'
14001 3' -59 NC_003521.1 + 163961 0.66 0.879672
Target:  5'- gGCCGCGgACGCCgaaGAUgGCgGUCGc -3'
miRNA:   3'- -UGGUGCgUGCGGug-CUGgCGgUAGUa -5'
14001 3' -59 NC_003521.1 + 74185 0.66 0.879672
Target:  5'- cGCCGCG-GCGCCcggcgcGCGGCCcgacGCCGUCu- -3'
miRNA:   3'- -UGGUGCgUGCGG------UGCUGG----CGGUAGua -5'
14001 3' -59 NC_003521.1 + 70644 0.66 0.879672
Target:  5'- gACaCACGCACGCUGCGGCUgguGCUG-CAg -3'
miRNA:   3'- -UG-GUGCGUGCGGUGCUGG---CGGUaGUa -5'
14001 3' -59 NC_003521.1 + 175110 0.66 0.879672
Target:  5'- gGCCAgGgC-CGCCGCGgcGCCGCUGUCc- -3'
miRNA:   3'- -UGGUgC-GuGCGGUGC--UGGCGGUAGua -5'
14001 3' -59 NC_003521.1 + 212280 0.66 0.879672
Target:  5'- cACCAgGCugGCCAgGGCgaagGCCggCAUg -3'
miRNA:   3'- -UGGUgCGugCGGUgCUGg---CGGuaGUA- -5'
14001 3' -59 NC_003521.1 + 180638 0.66 0.879672
Target:  5'- gGCgCGCGUucucACGCCGCGGCuCGCUAcCGg -3'
miRNA:   3'- -UG-GUGCG----UGCGGUGCUG-GCGGUaGUa -5'
14001 3' -59 NC_003521.1 + 42114 0.66 0.879672
Target:  5'- cCCGCGCGCGUCAaa--CGCgGUCAg -3'
miRNA:   3'- uGGUGCGUGCGGUgcugGCGgUAGUa -5'
14001 3' -59 NC_003521.1 + 127438 0.66 0.879672
Target:  5'- cACC-CGCcCGCgGCGuCCGCCGUa-- -3'
miRNA:   3'- -UGGuGCGuGCGgUGCuGGCGGUAgua -5'
14001 3' -59 NC_003521.1 + 53004 0.66 0.878991
Target:  5'- cGCCcuGCGCAacaGCCACGACUucgugcaGCCGUa-- -3'
miRNA:   3'- -UGG--UGCGUg--CGGUGCUGG-------CGGUAgua -5'
14001 3' -59 NC_003521.1 + 142449 0.66 0.878308
Target:  5'- aGCCuCGgGCGCCACuucgcccgaauCCGUCGUCAUg -3'
miRNA:   3'- -UGGuGCgUGCGGUGcu---------GGCGGUAGUA- -5'
14001 3' -59 NC_003521.1 + 222365 0.66 0.877623
Target:  5'- cGCCGCGCagcccgcggucgaaGCGgCACaGGCCGCgCGUCu- -3'
miRNA:   3'- -UGGUGCG--------------UGCgGUG-CUGGCG-GUAGua -5'
14001 3' -59 NC_003521.1 + 163094 0.66 0.872772
Target:  5'- gGCCcguccucggGCGCcaGCGCCACGAccaCCGCCGccuccUCGg -3'
miRNA:   3'- -UGG---------UGCG--UGCGGUGCU---GGCGGU-----AGUa -5'
14001 3' -59 NC_003521.1 + 41370 0.66 0.872772
Target:  5'- cACCuACGCGCGCCAguCGuACCGCUc---- -3'
miRNA:   3'- -UGG-UGCGUGCGGU--GC-UGGCGGuagua -5'
14001 3' -59 NC_003521.1 + 79674 0.66 0.872772
Target:  5'- uGCgaACG-ACGuCCGCGACCGCCcgCGg -3'
miRNA:   3'- -UGg-UGCgUGC-GGUGCUGGCGGuaGUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.