miRNA display CGI


Results 1 - 20 of 328 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14001 3' -59 NC_003521.1 + 434 0.67 0.835399
Target:  5'- cACaCACGCACGCCuGCGcuucUCGCCGUUu- -3'
miRNA:   3'- -UG-GUGCGUGCGG-UGCu---GGCGGUAGua -5'
14001 3' -59 NC_003521.1 + 698 0.66 0.865673
Target:  5'- uCCGCGCcCGCCgggACGACCGCaCGc--- -3'
miRNA:   3'- uGGUGCGuGCGG---UGCUGGCG-GUagua -5'
14001 3' -59 NC_003521.1 + 1032 0.72 0.545645
Target:  5'- cGCCGCGCA-GCCAgaUGGCCGgCGUCGg -3'
miRNA:   3'- -UGGUGCGUgCGGU--GCUGGCgGUAGUa -5'
14001 3' -59 NC_003521.1 + 1057 0.66 0.858381
Target:  5'- -aCGCGUACaGCU-CGACCGaCCAUCGg -3'
miRNA:   3'- ugGUGCGUG-CGGuGCUGGC-GGUAGUa -5'
14001 3' -59 NC_003521.1 + 1554 0.68 0.748833
Target:  5'- aGCCGuuCGCcucgGCGCCACacCCGCCGUCGc -3'
miRNA:   3'- -UGGU--GCG----UGCGGUGcuGGCGGUAGUa -5'
14001 3' -59 NC_003521.1 + 3640 0.67 0.80241
Target:  5'- uCUA-GCGUGCCACGGCCGCCGcCGUc -3'
miRNA:   3'- uGGUgCGUGCGGUGCUGGCGGUaGUA- -5'
14001 3' -59 NC_003521.1 + 4335 0.71 0.62342
Target:  5'- uCCAUGCcugGCGCCACcGCCGCCggCGg -3'
miRNA:   3'- uGGUGCG---UGCGGUGcUGGCGGuaGUa -5'
14001 3' -59 NC_003521.1 + 5544 0.67 0.835399
Target:  5'- aGCCG-GCGCGgC-CG-CCGCCAUCGUu -3'
miRNA:   3'- -UGGUgCGUGCgGuGCuGGCGGUAGUA- -5'
14001 3' -59 NC_003521.1 + 5680 0.68 0.776155
Target:  5'- -aCACGgGCGCCcguccgcggggaACGGgCGCCGUCAc -3'
miRNA:   3'- ugGUGCgUGCGG------------UGCUgGCGGUAGUa -5'
14001 3' -59 NC_003521.1 + 5987 0.69 0.730134
Target:  5'- uGCCACGCuauCGCCGuccCCGUCGUCGUc -3'
miRNA:   3'- -UGGUGCGu--GCGGUgcuGGCGGUAGUA- -5'
14001 3' -59 NC_003521.1 + 11552 0.67 0.80241
Target:  5'- cGCUACGCcuccgGCGCCGuCGugCGCCGg--- -3'
miRNA:   3'- -UGGUGCG-----UGCGGU-GCugGCGGUagua -5'
14001 3' -59 NC_003521.1 + 11756 0.68 0.758045
Target:  5'- uCCACGC-CGCCugGgugACUGCCuUCGUc -3'
miRNA:   3'- uGGUGCGuGCGGugC---UGGCGGuAGUA- -5'
14001 3' -59 NC_003521.1 + 11863 0.66 0.843238
Target:  5'- gAUCAcCGCACGCUcuuCGGCCGCagaUAUCAa -3'
miRNA:   3'- -UGGU-GCGUGCGGu--GCUGGCG---GUAGUa -5'
14001 3' -59 NC_003521.1 + 13187 0.7 0.65286
Target:  5'- gACCAgGCGUGCCGCucgGGCCGCCGUg-- -3'
miRNA:   3'- -UGGUgCGUGCGGUG---CUGGCGGUAgua -5'
14001 3' -59 NC_003521.1 + 13919 0.75 0.386129
Target:  5'- gGCCGCGgAgGCCGCGcugGCCGCCGUgGUg -3'
miRNA:   3'- -UGGUGCgUgCGGUGC---UGGCGGUAgUA- -5'
14001 3' -59 NC_003521.1 + 14530 0.73 0.489394
Target:  5'- cACCACGCccgagggcucguACGCCACGGCCGagcgCAUCc- -3'
miRNA:   3'- -UGGUGCG------------UGCGGUGCUGGCg---GUAGua -5'
14001 3' -59 NC_003521.1 + 16406 0.67 0.793789
Target:  5'- cACCACGCAgCGCCugG-CCGgCGagGUg -3'
miRNA:   3'- -UGGUGCGU-GCGGugCuGGCgGUagUA- -5'
14001 3' -59 NC_003521.1 + 16629 0.66 0.872772
Target:  5'- uACCGCugGCucuguCGCgGCGACCGCUuUCGg -3'
miRNA:   3'- -UGGUG--CGu----GCGgUGCUGGCGGuAGUa -5'
14001 3' -59 NC_003521.1 + 16798 0.71 0.603812
Target:  5'- gACgGCGCcCGCCcCGACCGCCGg--- -3'
miRNA:   3'- -UGgUGCGuGCGGuGCUGGCGGUagua -5'
14001 3' -59 NC_003521.1 + 16871 0.68 0.739527
Target:  5'- uACgACGUGCGuuccCCGCGGCCGCC-UCGa -3'
miRNA:   3'- -UGgUGCGUGC----GGUGCUGGCGGuAGUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.