miRNA display CGI


Results 1 - 20 of 537 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14001 5' -62 NC_003521.1 + 150874 0.66 0.788321
Target:  5'- cGGGCGAGaaCGAgguGCGGCcGCAcgccGGCGUc -3'
miRNA:   3'- -CCUGCUCcgGCU---CGCCGuCGU----CCGCG- -5'
14001 5' -62 NC_003521.1 + 173984 0.66 0.788321
Target:  5'- uGGAUGAacaGGUCGucGCGGCGGCuGaaGCa -3'
miRNA:   3'- -CCUGCU---CCGGCu-CGCCGUCGuCcgCG- -5'
14001 5' -62 NC_003521.1 + 99268 0.66 0.788321
Target:  5'- -cGCGAGGUCcAGacagaGGCGGUucuggcuguagaGGGCGCa -3'
miRNA:   3'- ccUGCUCCGGcUCg----CCGUCG------------UCCGCG- -5'
14001 5' -62 NC_003521.1 + 174215 0.66 0.788321
Target:  5'- --uUGGGGUCGcGCGGgucgGGCAGGgGCg -3'
miRNA:   3'- ccuGCUCCGGCuCGCCg---UCGUCCgCG- -5'
14001 5' -62 NC_003521.1 + 123443 0.66 0.788321
Target:  5'- aGGACGgaGGcGCCGuAGCGGgGaccGCGGGUugGCg -3'
miRNA:   3'- -CCUGC--UC-CGGC-UCGCCgU---CGUCCG--CG- -5'
14001 5' -62 NC_003521.1 + 191672 0.66 0.788321
Target:  5'- cGAUGAGGUCGccgaGGaCGGCgAGGCGUc -3'
miRNA:   3'- cCUGCUCCGGCucg-CC-GUCG-UCCGCG- -5'
14001 5' -62 NC_003521.1 + 161232 0.66 0.788321
Target:  5'- cGAUGGcGGCgGcAGCGGCAGUA-GCGg -3'
miRNA:   3'- cCUGCU-CCGgC-UCGCCGUCGUcCGCg -5'
14001 5' -62 NC_003521.1 + 234429 0.66 0.788321
Target:  5'- --cCGucGCCGccGCGGUAGCugcGGCGCc -3'
miRNA:   3'- ccuGCucCGGCu-CGCCGUCGu--CCGCG- -5'
14001 5' -62 NC_003521.1 + 33640 0.66 0.788321
Target:  5'- aGGcCGuGGagGGGCGGcCAGCAGaGCGg -3'
miRNA:   3'- -CCuGCuCCggCUCGCC-GUCGUC-CGCg -5'
14001 5' -62 NC_003521.1 + 205335 0.66 0.788321
Target:  5'- -uACGGcGCCuccucGGCGGCGGCAGcuGCGCc -3'
miRNA:   3'- ccUGCUcCGGc----UCGCCGUCGUC--CGCG- -5'
14001 5' -62 NC_003521.1 + 74909 0.66 0.788321
Target:  5'- uGGCGGcGGUgGAGuCGGCccGGCAG-CGCg -3'
miRNA:   3'- cCUGCU-CCGgCUC-GCCG--UCGUCcGCG- -5'
14001 5' -62 NC_003521.1 + 112753 0.66 0.788321
Target:  5'- -cGCGAGcCCauGGGCGGCaucGGC-GGCGCg -3'
miRNA:   3'- ccUGCUCcGG--CUCGCCG---UCGuCCGCG- -5'
14001 5' -62 NC_003521.1 + 195390 0.66 0.788321
Target:  5'- cGGCGAGGCCauGAccGCGccgaCGGCGGGCa- -3'
miRNA:   3'- cCUGCUCCGG--CU--CGCc---GUCGUCCGcg -5'
14001 5' -62 NC_003521.1 + 75977 0.66 0.788321
Target:  5'- cGACGAGG---AGCGGCccucGcCGGGCGCc -3'
miRNA:   3'- cCUGCUCCggcUCGCCGu---C-GUCCGCG- -5'
14001 5' -62 NC_003521.1 + 70126 0.66 0.788321
Target:  5'- aGGGCcgcuaucaGGGCCucGAGCuGCGGCGaGCGCg -3'
miRNA:   3'- -CCUGc-------UCCGG--CUCGcCGUCGUcCGCG- -5'
14001 5' -62 NC_003521.1 + 204723 0.66 0.788321
Target:  5'- cGGCGGGGa-GGGUGGCGaggguggugauGgAGGCGCc -3'
miRNA:   3'- cCUGCUCCggCUCGCCGU-----------CgUCCGCG- -5'
14001 5' -62 NC_003521.1 + 204005 0.66 0.783202
Target:  5'- cGACGAGcucaugcccgaguccGCCguccgcGAGCGGCuccGCAGcGCGUg -3'
miRNA:   3'- cCUGCUC---------------CGG------CUCGCCGu--CGUC-CGCG- -5'
14001 5' -62 NC_003521.1 + 162220 0.66 0.779765
Target:  5'- aGACGGGG---GGUGGUAGCGccgacGGCGCu -3'
miRNA:   3'- cCUGCUCCggcUCGCCGUCGU-----CCGCG- -5'
14001 5' -62 NC_003521.1 + 119845 0.66 0.779765
Target:  5'- cGACGAGGaCGAGCuGGCGGac--CGCa -3'
miRNA:   3'- cCUGCUCCgGCUCG-CCGUCguccGCG- -5'
14001 5' -62 NC_003521.1 + 164747 0.66 0.779765
Target:  5'- gGGAgGGGggcaucgcggucGCCGGGCGaaccauagugacGCGGCGGGCa- -3'
miRNA:   3'- -CCUgCUC------------CGGCUCGC------------CGUCGUCCGcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.