miRNA display CGI


Results 1 - 20 of 30 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14002 3' -57.3 NC_003521.1 + 59546 0.66 0.926803
Target:  5'- -uCCCggcugcagCUGGACGCCGugaucgaaaacgccGGUCUCuACg -3'
miRNA:   3'- uuGGGa-------GACCUGCGGCuu------------CCAGAG-UG- -5'
14002 3' -57.3 NC_003521.1 + 155914 0.66 0.926284
Target:  5'- cGGCCCUgCUGGaccggGCGCUGAcGGccuaCUCGCg -3'
miRNA:   3'- -UUGGGA-GACC-----UGCGGCUuCCa---GAGUG- -5'
14002 3' -57.3 NC_003521.1 + 3974 0.66 0.925763
Target:  5'- gGACCCg--GGGCaccgucaGCgCGGAGGUCUgGCg -3'
miRNA:   3'- -UUGGGagaCCUG-------CG-GCUUCCAGAgUG- -5'
14002 3' -57.3 NC_003521.1 + 181343 0.66 0.920972
Target:  5'- gAGCUUUUUGaaGGCGUCGAGGGUCUUg- -3'
miRNA:   3'- -UUGGGAGAC--CUGCGGCUUCCAGAGug -5'
14002 3' -57.3 NC_003521.1 + 60702 0.66 0.920972
Target:  5'- gGACCCgg-GGGCGgCGcGGGUCgCACc -3'
miRNA:   3'- -UUGGGagaCCUGCgGCuUCCAGaGUG- -5'
14002 3' -57.3 NC_003521.1 + 221676 0.66 0.915435
Target:  5'- uGCUCUC-GGucaccACGCCGuGGGUCUCGu -3'
miRNA:   3'- uUGGGAGaCC-----UGCGGCuUCCAGAGUg -5'
14002 3' -57.3 NC_003521.1 + 149287 0.66 0.912004
Target:  5'- cGCCCacaaguacgugCUGGAgcgcgacgacgcggcCGCCGu-GGUCUCACg -3'
miRNA:   3'- uUGGGa----------GACCU---------------GCGGCuuCCAGAGUG- -5'
14002 3' -57.3 NC_003521.1 + 164540 0.66 0.909673
Target:  5'- uGCUCUUc-GACGaCCGcGAGGUCUCGCa -3'
miRNA:   3'- uUGGGAGacCUGC-GGC-UUCCAGAGUG- -5'
14002 3' -57.3 NC_003521.1 + 19531 0.66 0.903687
Target:  5'- uGGCCCUC-GGAC-CCGAggaucgGGGUCUUg- -3'
miRNA:   3'- -UUGGGAGaCCUGcGGCU------UCCAGAGug -5'
14002 3' -57.3 NC_003521.1 + 34971 0.66 0.903687
Target:  5'- cGGCCagaUCgcGGGCGCaGAAGGUCUC-Cg -3'
miRNA:   3'- -UUGGg--AGa-CCUGCGgCUUCCAGAGuG- -5'
14002 3' -57.3 NC_003521.1 + 81162 0.67 0.897481
Target:  5'- --aCCUCUaGGguGCGCCGuuGGUC-CACg -3'
miRNA:   3'- uugGGAGA-CC--UGCGGCuuCCAGaGUG- -5'
14002 3' -57.3 NC_003521.1 + 194408 0.67 0.891057
Target:  5'- uACCCUCgcacgaGGAgGCCGAGGGa--CGCa -3'
miRNA:   3'- uUGGGAGa-----CCUgCGGCUUCCagaGUG- -5'
14002 3' -57.3 NC_003521.1 + 37439 0.67 0.891057
Target:  5'- cGAgCCUCUGaagguGACGCUGuGGG-CUCGCg -3'
miRNA:   3'- -UUgGGAGAC-----CUGCGGCuUCCaGAGUG- -5'
14002 3' -57.3 NC_003521.1 + 31824 0.67 0.891057
Target:  5'- cGCCgUCUcggcccGGGCGCCGAAGGUggCGu -3'
miRNA:   3'- uUGGgAGA------CCUGCGGCUUCCAgaGUg -5'
14002 3' -57.3 NC_003521.1 + 115546 0.67 0.891057
Target:  5'- cGACuCCUCUGGaucucgaagGCGUCGggGGUgaugCGCa -3'
miRNA:   3'- -UUG-GGAGACC---------UGCGGCuuCCAga--GUG- -5'
14002 3' -57.3 NC_003521.1 + 197837 0.67 0.883743
Target:  5'- cGGCCgUCUgcaggucgucgguGGGCGCCGGcGGGUCgCGCu -3'
miRNA:   3'- -UUGGgAGA-------------CCUGCGGCU-UCCAGaGUG- -5'
14002 3' -57.3 NC_003521.1 + 111737 0.67 0.863251
Target:  5'- cACCCacagcCUGcaguACGCCGAGGGUCUgCGCc -3'
miRNA:   3'- uUGGGa----GACc---UGCGGCUUCCAGA-GUG- -5'
14002 3' -57.3 NC_003521.1 + 169905 0.68 0.82412
Target:  5'- gGACCCUgCUGG-CGCUGAcGGcUCUgACg -3'
miRNA:   3'- -UUGGGA-GACCuGCGGCUuCC-AGAgUG- -5'
14002 3' -57.3 NC_003521.1 + 99805 0.68 0.815771
Target:  5'- cAGCCCUcCUGGugGUCGAggaugcagcccAGGUC-CAg -3'
miRNA:   3'- -UUGGGA-GACCugCGGCU-----------UCCAGaGUg -5'
14002 3' -57.3 NC_003521.1 + 133335 0.69 0.793345
Target:  5'- aGACCagugugCUCUGGGCGCCGGAcguggagaucagcacGGUC-CGCc -3'
miRNA:   3'- -UUGG------GAGACCUGCGGCUU---------------CCAGaGUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.