miRNA display CGI


Results 1 - 20 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14002 5' -57.2 NC_003521.1 + 62637 0.66 0.934961
Target:  5'- uUCGGcGccGCCcuguccaacuucuacUACGACGCCCUCu--- -3'
miRNA:   3'- -AGCC-CucCGG---------------AUGCUGCGGGAGuuuu -5'
14002 5' -57.2 NC_003521.1 + 62210 0.66 0.933023
Target:  5'- cCaGGAGGCgUugGACGCCgugcugCAGGAg -3'
miRNA:   3'- aGcCCUCCGgAugCUGCGGga----GUUUU- -5'
14002 5' -57.2 NC_003521.1 + 98955 0.66 0.933023
Target:  5'- aCGGGugguggcGGCUagcgacgGCGGCGCCUUUAGGAg -3'
miRNA:   3'- aGCCCu------CCGGa------UGCUGCGGGAGUUUU- -5'
14002 5' -57.2 NC_003521.1 + 6532 0.66 0.92802
Target:  5'- -aGGGcGGUCUGCGuccCGCCC-CAGGg -3'
miRNA:   3'- agCCCuCCGGAUGCu--GCGGGaGUUUu -5'
14002 5' -57.2 NC_003521.1 + 88066 0.66 0.92802
Target:  5'- gUCGcGGuGGUCgGCGGCGCCCg----- -3'
miRNA:   3'- -AGC-CCuCCGGaUGCUGCGGGaguuuu -5'
14002 5' -57.2 NC_003521.1 + 59224 0.66 0.92802
Target:  5'- aUCGGG-GcCCUG-GACGCCCUgGAGGu -3'
miRNA:   3'- -AGCCCuCcGGAUgCUGCGGGAgUUUU- -5'
14002 5' -57.2 NC_003521.1 + 76385 0.66 0.922792
Target:  5'- ----cAGGCCcGCGGCGCCCUCc--- -3'
miRNA:   3'- agcccUCCGGaUGCUGCGGGAGuuuu -5'
14002 5' -57.2 NC_003521.1 + 140303 0.66 0.922792
Target:  5'- aCGGGcAGGCCcguCGACGUcgCUUCAGGc -3'
miRNA:   3'- aGCCC-UCCGGau-GCUGCG--GGAGUUUu -5'
14002 5' -57.2 NC_003521.1 + 166243 0.66 0.921179
Target:  5'- gCGGGAcGCCgcgccgccgcuccguCGcCGCCCUCAGAc -3'
miRNA:   3'- aGCCCUcCGGau-------------GCuGCGGGAGUUUu -5'
14002 5' -57.2 NC_003521.1 + 122191 0.66 0.917338
Target:  5'- ----cGGGCUgGCGACGCCCUCGc-- -3'
miRNA:   3'- agcccUCCGGaUGCUGCGGGAGUuuu -5'
14002 5' -57.2 NC_003521.1 + 213407 0.66 0.917338
Target:  5'- cCuGGAGGCCUACGuGCGCa-UCAAc- -3'
miRNA:   3'- aGcCCUCCGGAUGC-UGCGggAGUUuu -5'
14002 5' -57.2 NC_003521.1 + 13201 0.66 0.91678
Target:  5'- cUCGGGccgccguguuggaGGGCCgacCGGCGCCCa----- -3'
miRNA:   3'- -AGCCC-------------UCCGGau-GCUGCGGGaguuuu -5'
14002 5' -57.2 NC_003521.1 + 226285 0.66 0.91166
Target:  5'- cUCGGccguGGCgUACGA-GCCCUCGGGc -3'
miRNA:   3'- -AGCCcu--CCGgAUGCUgCGGGAGUUUu -5'
14002 5' -57.2 NC_003521.1 + 140616 0.66 0.91166
Target:  5'- uUCGaGGAGGCCguaaaUAUGGCGCUCguggccugCGAAGc -3'
miRNA:   3'- -AGC-CCUCCGG-----AUGCUGCGGGa-------GUUUU- -5'
14002 5' -57.2 NC_003521.1 + 32722 0.66 0.91166
Target:  5'- gUGGGGGGUUgGCGACGCCaC-CAGc- -3'
miRNA:   3'- aGCCCUCCGGaUGCUGCGG-GaGUUuu -5'
14002 5' -57.2 NC_003521.1 + 46453 0.66 0.91108
Target:  5'- gCGGGGgcuggucGGCCUcguCGuCGUCCUCGAAc -3'
miRNA:   3'- aGCCCU-------CCGGAu--GCuGCGGGAGUUUu -5'
14002 5' -57.2 NC_003521.1 + 128012 0.66 0.90576
Target:  5'- cCGGGGGGUC-GCGGcCGUCC-CAGAGc -3'
miRNA:   3'- aGCCCUCCGGaUGCU-GCGGGaGUUUU- -5'
14002 5' -57.2 NC_003521.1 + 98481 0.66 0.90576
Target:  5'- cCGcGGcGGCCgugGCGGCGgCCUCGc-- -3'
miRNA:   3'- aGC-CCuCCGGa--UGCUGCgGGAGUuuu -5'
14002 5' -57.2 NC_003521.1 + 77748 0.66 0.90576
Target:  5'- aCGGGccGGCCUcgGCGugGCuCUUCAc-- -3'
miRNA:   3'- aGCCCu-CCGGA--UGCugCG-GGAGUuuu -5'
14002 5' -57.2 NC_003521.1 + 16679 0.66 0.90576
Target:  5'- cUGGGAcGGCUgg-GACGCCUUCAc-- -3'
miRNA:   3'- aGCCCU-CCGGaugCUGCGGGAGUuuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.