miRNA display CGI


Results 21 - 40 of 220 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14003 3' -56.3 NC_003521.1 + 31183 0.66 0.961675
Target:  5'- aGUUuCUGAaaCACGUGGCguuguucacgUUCGGCaUCCa -3'
miRNA:   3'- -CAGuGGCU--GUGCGCCGa---------AAGCCG-AGG- -5'
14003 3' -56.3 NC_003521.1 + 113857 0.66 0.961675
Target:  5'- --gGCCGGCgACGaCGGCgcg-GGUUCCg -3'
miRNA:   3'- cagUGGCUG-UGC-GCCGaaagCCGAGG- -5'
14003 3' -56.3 NC_003521.1 + 190041 0.66 0.960661
Target:  5'- cGUCGCCGAucgaccaggaccgcCGCGCGGUcUUCacguacguucuGGC-CCg -3'
miRNA:   3'- -CAGUGGCU--------------GUGCGCCGaAAG-----------CCGaGG- -5'
14003 3' -56.3 NC_003521.1 + 74761 0.66 0.960661
Target:  5'- cGUCGCCGuCgACGUGGCUggaguaugacgacggCGGCagCg -3'
miRNA:   3'- -CAGUGGCuG-UGCGCCGAaa-------------GCCGagG- -5'
14003 3' -56.3 NC_003521.1 + 158814 0.66 0.959629
Target:  5'- cGUCACCGucaaggagcaguaccACAccCGCGGCagcaccUGGCUCUa -3'
miRNA:   3'- -CAGUGGC---------------UGU--GCGCCGaaa---GCCGAGG- -5'
14003 3' -56.3 NC_003521.1 + 146511 0.66 0.958225
Target:  5'- --gGCCGACcCGCaGaaacggCGGCUCCa -3'
miRNA:   3'- cagUGGCUGuGCGcCgaaa--GCCGAGG- -5'
14003 3' -56.3 NC_003521.1 + 175187 0.66 0.958225
Target:  5'- gGUC-CUGGCugGCGcGCg-UCaGCUCCu -3'
miRNA:   3'- -CAGuGGCUGugCGC-CGaaAGcCGAGG- -5'
14003 3' -56.3 NC_003521.1 + 150873 0.66 0.958225
Target:  5'- -cCGCCaGAgACGCGGCUUUUucaUCCg -3'
miRNA:   3'- caGUGG-CUgUGCGCCGAAAGccgAGG- -5'
14003 3' -56.3 NC_003521.1 + 146361 0.66 0.958225
Target:  5'- -gCGCCGuACACGgGGC----GGUUCCg -3'
miRNA:   3'- caGUGGC-UGUGCgCCGaaagCCGAGG- -5'
14003 3' -56.3 NC_003521.1 + 196234 0.66 0.958225
Target:  5'- --gGCUGACuuggcgccugGCGCGGUUUcugUGGUUCCg -3'
miRNA:   3'- cagUGGCUG----------UGCGCCGAAa--GCCGAGG- -5'
14003 3' -56.3 NC_003521.1 + 213075 0.66 0.958225
Target:  5'- cGUCGggaCGACAuCGCGGCgcUCGuuCUCCu -3'
miRNA:   3'- -CAGUg--GCUGU-GCGCCGaaAGCc-GAGG- -5'
14003 3' -56.3 NC_003521.1 + 32359 0.66 0.95715
Target:  5'- --aGCCGGCgggACGgGGCUUUUGGUggcgcguggccaggUCCu -3'
miRNA:   3'- cagUGGCUG---UGCgCCGAAAGCCG--------------AGG- -5'
14003 3' -56.3 NC_003521.1 + 38614 0.66 0.956056
Target:  5'- uUCGCCGuaugcguuauuagagGCGCGcCGGCUgggugucccgCGGgUCCg -3'
miRNA:   3'- cAGUGGC---------------UGUGC-GCCGAaa--------GCCgAGG- -5'
14003 3' -56.3 NC_003521.1 + 238841 0.66 0.956056
Target:  5'- uUCGCCGuaugcguuauuagagGCGCGcCGGCUgggugucccgCGGgUCCg -3'
miRNA:   3'- cAGUGGC---------------UGUGC-GCCGAaa--------GCCgAGG- -5'
14003 3' -56.3 NC_003521.1 + 6156 0.66 0.954568
Target:  5'- --aGCCaAUGCGcCGGCUc-CGGCUCCu -3'
miRNA:   3'- cagUGGcUGUGC-GCCGAaaGCCGAGG- -5'
14003 3' -56.3 NC_003521.1 + 177176 0.66 0.954568
Target:  5'- uUCACgGGCACGgGGUUgcgcgugCGGUacuucUCCa -3'
miRNA:   3'- cAGUGgCUGUGCgCCGAaa-----GCCG-----AGG- -5'
14003 3' -56.3 NC_003521.1 + 137916 0.66 0.954568
Target:  5'- -gUACCcguGGCugGCGGgUcgCGGUUCCc -3'
miRNA:   3'- caGUGG---CUGugCGCCgAaaGCCGAGG- -5'
14003 3' -56.3 NC_003521.1 + 186653 0.66 0.954568
Target:  5'- cGUCGCgCGGCG-GUGGCggaggCGGCggCCu -3'
miRNA:   3'- -CAGUG-GCUGUgCGCCGaaa--GCCGa-GG- -5'
14003 3' -56.3 NC_003521.1 + 14391 0.66 0.954568
Target:  5'- --aGCUGGCGCGCuacGGCgugUCGcGCUCg -3'
miRNA:   3'- cagUGGCUGUGCG---CCGaa-AGC-CGAGg -5'
14003 3' -56.3 NC_003521.1 + 52677 0.66 0.954568
Target:  5'- -gCAgCGGCAC-CGGCagcgUCGGCggugCCa -3'
miRNA:   3'- caGUgGCUGUGcGCCGaa--AGCCGa---GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.