miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14003 5' -54.9 NC_003521.1 + 211210 0.66 0.967885
Target:  5'- cGGGGGCGG-GUUGGUGAagGUCUUg- -3'
miRNA:   3'- cUCCUCGCUaCAGCCGCUa-CAGAGac -5'
14003 5' -54.9 NC_003521.1 + 4456 0.67 0.964774
Target:  5'- -cGGAGCGAUG-CGGCuGAcgGUCUg-- -3'
miRNA:   3'- cuCCUCGCUACaGCCG-CUa-CAGAgac -5'
14003 5' -54.9 NC_003521.1 + 100591 0.67 0.961458
Target:  5'- uAGGGGcCGGUGgacgaggCGGCGAagcGUCUCUu -3'
miRNA:   3'- cUCCUC-GCUACa------GCCGCUa--CAGAGAc -5'
14003 5' -54.9 NC_003521.1 + 93109 0.67 0.961458
Target:  5'- -uGGAGCuGggGUUGGCGGUuugggauucgGUUUCUGg -3'
miRNA:   3'- cuCCUCG-CuaCAGCCGCUA----------CAGAGAC- -5'
14003 5' -54.9 NC_003521.1 + 50833 0.67 0.961458
Target:  5'- uGGGAGCGGUGaCGGCGGc-UUUUUGa -3'
miRNA:   3'- cUCCUCGCUACaGCCGCUacAGAGAC- -5'
14003 5' -54.9 NC_003521.1 + 102131 0.67 0.957931
Target:  5'- aGAGGGGCGAguUGUucuugucacCGGUGgcGUCUCc- -3'
miRNA:   3'- -CUCCUCGCU--ACA---------GCCGCuaCAGAGac -5'
14003 5' -54.9 NC_003521.1 + 156721 0.67 0.954189
Target:  5'- gGAGGAGCGcAUGUUcGUGGgcucgGUCUUUGc -3'
miRNA:   3'- -CUCCUCGC-UACAGcCGCUa----CAGAGAC- -5'
14003 5' -54.9 NC_003521.1 + 144494 0.67 0.950229
Target:  5'- cGAGGAGgaccuggacgcCGAcUGUCGGCaGAUGUUUCc- -3'
miRNA:   3'- -CUCCUC-----------GCU-ACAGCCG-CUACAGAGac -5'
14003 5' -54.9 NC_003521.1 + 236300 0.68 0.94164
Target:  5'- -cGGGGCGAUG-CGGUGAUGaacaUCgagaagCUGg -3'
miRNA:   3'- cuCCUCGCUACaGCCGCUAC----AGa-----GAC- -5'
14003 5' -54.9 NC_003521.1 + 177941 0.68 0.94164
Target:  5'- uGGGGAGUGGccgGUCGGUaccgggaggGAUGUCUgaGg -3'
miRNA:   3'- -CUCCUCGCUa--CAGCCG---------CUACAGAgaC- -5'
14003 5' -54.9 NC_003521.1 + 198671 0.68 0.932145
Target:  5'- -cGGAcGCGAUuUCGGCG-UGUCUCc- -3'
miRNA:   3'- cuCCU-CGCUAcAGCCGCuACAGAGac -5'
14003 5' -54.9 NC_003521.1 + 126727 0.69 0.916183
Target:  5'- cGAGGcGGCGcgGUCGGCGAcaUGg--CUGc -3'
miRNA:   3'- -CUCC-UCGCuaCAGCCGCU--ACagaGAC- -5'
14003 5' -54.9 NC_003521.1 + 139170 0.69 0.885047
Target:  5'- gGAGGAGcCGGUGUCGcGC-AUGUUggUCUGc -3'
miRNA:   3'- -CUCCUC-GCUACAGC-CGcUACAG--AGAC- -5'
14003 5' -54.9 NC_003521.1 + 18645 0.7 0.848566
Target:  5'- cGGGGAGCaaGGUGUgacuguggucgUGuGUGGUGUCUCUGg -3'
miRNA:   3'- -CUCCUCG--CUACA-----------GC-CGCUACAGAGAC- -5'
14003 5' -54.9 NC_003521.1 + 190398 1.07 0.007636
Target:  5'- uGAGGAGCGAUGUCGGCGAUGUCUCUGc -3'
miRNA:   3'- -CUCCUCGCUACAGCCGCUACAGAGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.