miRNA display CGI


Results 1 - 20 of 246 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14005 3' -53.8 NC_003521.1 + 224732 0.65 0.986634
Target:  5'- gUGCUcGCCGACgCAGGcGGcCAGCGcgucgggGCUCc -3'
miRNA:   3'- -ACGA-CGGCUGgGUUC-CU-GUUGU-------UGAG- -5'
14005 3' -53.8 NC_003521.1 + 2001 0.65 0.986311
Target:  5'- gGCgaaC-ACCCAGGGACAcggcgucgcgccccACAACUCg -3'
miRNA:   3'- aCGacgGcUGGGUUCCUGU--------------UGUUGAG- -5'
14005 3' -53.8 NC_003521.1 + 16775 0.66 0.985135
Target:  5'- gGgUGaCGAagaguCCCAGGGGCGACGGCg- -3'
miRNA:   3'- aCgACgGCU-----GGGUUCCUGUUGUUGag -5'
14005 3' -53.8 NC_003521.1 + 181593 0.66 0.985135
Target:  5'- gGCUGCCGugcGCCCuaaaGACAu--GCUCg -3'
miRNA:   3'- aCGACGGC---UGGGuuc-CUGUuguUGAG- -5'
14005 3' -53.8 NC_003521.1 + 148891 0.66 0.985135
Target:  5'- gGCcgugGCCGACgCCGAGGAgCGccgccGCGGCaUCg -3'
miRNA:   3'- aCGa---CGGCUG-GGUUCCU-GU-----UGUUG-AG- -5'
14005 3' -53.8 NC_003521.1 + 54074 0.66 0.985135
Target:  5'- aUGCcGCCGAgcCCCA---GCAugGGCUCg -3'
miRNA:   3'- -ACGaCGGCU--GGGUuccUGUugUUGAG- -5'
14005 3' -53.8 NC_003521.1 + 124161 0.66 0.985135
Target:  5'- cGCUGCCGugCa---GGCGAUAGCg- -3'
miRNA:   3'- aCGACGGCugGguucCUGUUGUUGag -5'
14005 3' -53.8 NC_003521.1 + 36842 0.66 0.985135
Target:  5'- cGCUGCUGugCCGGGuagagcaccuGACGugGGC-Cg -3'
miRNA:   3'- aCGACGGCugGGUUC----------CUGUugUUGaG- -5'
14005 3' -53.8 NC_003521.1 + 75143 0.66 0.985135
Target:  5'- gGCgGCCGACCUggGGAUgccugGACGc--- -3'
miRNA:   3'- aCGaCGGCUGGGuuCCUG-----UUGUugag -5'
14005 3' -53.8 NC_003521.1 + 73837 0.66 0.98496
Target:  5'- cGCUGaCGGCCgAGGGAacgacgucaaccaCAGCGACg- -3'
miRNA:   3'- aCGACgGCUGGgUUCCU-------------GUUGUUGag -5'
14005 3' -53.8 NC_003521.1 + 205946 0.66 0.984066
Target:  5'- cGCUggGCUGGCCCucgcagugcuucuacGuGGugGGCGGCUCu -3'
miRNA:   3'- aCGA--CGGCUGGG---------------UuCCugUUGUUGAG- -5'
14005 3' -53.8 NC_003521.1 + 21402 0.66 0.983322
Target:  5'- cGCUGggauaCGGCCCucuGGCAGCuACUCg -3'
miRNA:   3'- aCGACg----GCUGGGuucCUGUUGuUGAG- -5'
14005 3' -53.8 NC_003521.1 + 17119 0.66 0.983322
Target:  5'- cGUguUCGACCuCAAGGACGugGACg- -3'
miRNA:   3'- aCGacGGCUGG-GUUCCUGUugUUGag -5'
14005 3' -53.8 NC_003521.1 + 210741 0.66 0.983322
Target:  5'- cGCUGCuaccgugagCGGCCggCGGGGACGGCAcagACUg -3'
miRNA:   3'- aCGACG---------GCUGG--GUUCCUGUUGU---UGAg -5'
14005 3' -53.8 NC_003521.1 + 159089 0.66 0.983322
Target:  5'- aGCUGgUGGCCUuuuuggagcGGGGCGACuccguGCUCu -3'
miRNA:   3'- aCGACgGCUGGGu--------UCCUGUUGu----UGAG- -5'
14005 3' -53.8 NC_003521.1 + 152358 0.66 0.983322
Target:  5'- cUGCUcugggGCCGGCC--GGGGCGGCGcgcccucuACUCu -3'
miRNA:   3'- -ACGA-----CGGCUGGguUCCUGUUGU--------UGAG- -5'
14005 3' -53.8 NC_003521.1 + 133747 0.66 0.983132
Target:  5'- aUGCUgGCCGGCaggcccggcgauuCCGGGGAC-GCGGCg- -3'
miRNA:   3'- -ACGA-CGGCUG-------------GGUUCCUGuUGUUGag -5'
14005 3' -53.8 NC_003521.1 + 84776 0.66 0.983132
Target:  5'- cGUUGuuGGCaCCGccgaagcagagggAGGGCAcgucggGCAGCUCg -3'
miRNA:   3'- aCGACggCUG-GGU-------------UCCUGU------UGUUGAG- -5'
14005 3' -53.8 NC_003521.1 + 177548 0.66 0.983132
Target:  5'- aGCUGCUGcACCCGgucgccgAGGA--AgGACUCg -3'
miRNA:   3'- aCGACGGC-UGGGU-------UCCUguUgUUGAG- -5'
14005 3' -53.8 NC_003521.1 + 202222 0.66 0.982747
Target:  5'- cGCauacGgCGAacaCCCAGGGACAcggcgucgcgccccACAACUCg -3'
miRNA:   3'- aCGa---CgGCU---GGGUUCCUGU--------------UGUUGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.