miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14005 5' -50.8 NC_003521.1 + 146181 0.66 0.999342
Target:  5'- gCGAGUUGCUGGcCGGCGgacGGc--- -3'
miRNA:   3'- gGCUCAACGACUaGCUGCac-CCauug -5'
14005 5' -50.8 NC_003521.1 + 190987 0.66 0.999342
Target:  5'- gCCGAGcggcagcagGCgcaGGUgGACGUGGGcAGCc -3'
miRNA:   3'- -GGCUCaa-------CGa--CUAgCUGCACCCaUUG- -5'
14005 5' -50.8 NC_003521.1 + 58304 0.66 0.999196
Target:  5'- aCCGAGa-GCuUGGUCuccuUGUGGGUGAUg -3'
miRNA:   3'- -GGCUCaaCG-ACUAGcu--GCACCCAUUG- -5'
14005 5' -50.8 NC_003521.1 + 146733 0.66 0.999196
Target:  5'- -gGGGUUGUUGcgCGuCGccuccGGGUGACu -3'
miRNA:   3'- ggCUCAACGACuaGCuGCa----CCCAUUG- -5'
14005 5' -50.8 NC_003521.1 + 130762 0.66 0.999196
Target:  5'- uUCGGGUacggacugacgcUGCUG-UCGGCG-GGGUcACc -3'
miRNA:   3'- -GGCUCA------------ACGACuAGCUGCaCCCAuUG- -5'
14005 5' -50.8 NC_003521.1 + 161721 0.66 0.999023
Target:  5'- aCCGAGcgGUUGcgCGaggucaucgccaGCGUGGGggAGCu -3'
miRNA:   3'- -GGCUCaaCGACuaGC------------UGCACCCa-UUG- -5'
14005 5' -50.8 NC_003521.1 + 168108 0.66 0.998966
Target:  5'- aCCGAGgagGCgugGAUCGccgaggacgacagcGcCGUGGGUGGa -3'
miRNA:   3'- -GGCUCaa-CGa--CUAGC--------------U-GCACCCAUUg -5'
14005 5' -50.8 NC_003521.1 + 17268 0.66 0.998819
Target:  5'- -aGAGgaGCaGuAUCGGCGUgucguGGGUAACg -3'
miRNA:   3'- ggCUCaaCGaC-UAGCUGCA-----CCCAUUG- -5'
14005 5' -50.8 NC_003521.1 + 184133 0.66 0.998819
Target:  5'- gCCGAGacggcgUGUUGAUCGuGCaUGGGcgAGCg -3'
miRNA:   3'- -GGCUCa-----ACGACUAGC-UGcACCCa-UUG- -5'
14005 5' -50.8 NC_003521.1 + 47180 0.66 0.998581
Target:  5'- uCCGGGUcGCUGuaCGACGUGGu---- -3'
miRNA:   3'- -GGCUCAaCGACuaGCUGCACCcauug -5'
14005 5' -50.8 NC_003521.1 + 178369 0.67 0.998302
Target:  5'- aCGGGccGCUGcUUGGCGUaGGcGUAGCg -3'
miRNA:   3'- gGCUCaaCGACuAGCUGCA-CC-CAUUG- -5'
14005 5' -50.8 NC_003521.1 + 58981 0.67 0.998302
Target:  5'- gCCGucAGgcacUGgUGGUCGGCGUGguagaGGUAGCg -3'
miRNA:   3'- -GGC--UCa---ACgACUAGCUGCAC-----CCAUUG- -5'
14005 5' -50.8 NC_003521.1 + 128824 0.67 0.998302
Target:  5'- cCCGGuGggGCUcguaGA-CGGCGaUGGGUAGCu -3'
miRNA:   3'- -GGCU-CaaCGA----CUaGCUGC-ACCCAUUG- -5'
14005 5' -50.8 NC_003521.1 + 120799 0.67 0.998178
Target:  5'- gCCGGGUUGCUGcuGUCGAUGUccgaguccucgucGGUAu- -3'
miRNA:   3'- -GGCUCAACGAC--UAGCUGCAc------------CCAUug -5'
14005 5' -50.8 NC_003521.1 + 91344 0.67 0.997979
Target:  5'- gCGAGgUGCUGGUCgggagGACgGUGGGg--- -3'
miRNA:   3'- gGCUCaACGACUAG-----CUG-CACCCauug -5'
14005 5' -50.8 NC_003521.1 + 39565 0.67 0.997872
Target:  5'- uCCGAGUucgcaucggaguccUGCcgGcGUCGGCGguccugcccUGGGUGGCg -3'
miRNA:   3'- -GGCUCA--------------ACGa-C-UAGCUGC---------ACCCAUUG- -5'
14005 5' -50.8 NC_003521.1 + 180881 0.67 0.997605
Target:  5'- gCCGGGcUGUUGAUCGGCGUccacgucGGaGACc -3'
miRNA:   3'- -GGCUCaACGACUAGCUGCAc------CCaUUG- -5'
14005 5' -50.8 NC_003521.1 + 124481 0.67 0.997605
Target:  5'- gUCGGGcgGCUGGUCGuagcGCGUGaGGaAGCc -3'
miRNA:   3'- -GGCUCaaCGACUAGC----UGCAC-CCaUUG- -5'
14005 5' -50.8 NC_003521.1 + 238806 0.67 0.996684
Target:  5'- aCGAGUUGUgggGcgCGACGccgugucccUGGGUGu- -3'
miRNA:   3'- gGCUCAACGa--CuaGCUGC---------ACCCAUug -5'
14005 5' -50.8 NC_003521.1 + 104957 0.67 0.996684
Target:  5'- -gGAGgaGCUGA-CGACGgaaGGGcUGACg -3'
miRNA:   3'- ggCUCaaCGACUaGCUGCa--CCC-AUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.