miRNA display CGI


Results 21 - 40 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14006 3' -57.3 NC_003521.1 + 87951 0.67 0.905208
Target:  5'- cGCGACcugCUGACACg---CUaCGCCUCg -3'
miRNA:   3'- uCGCUGa--GGCUGUGagcaGA-GCGGAG- -5'
14006 3' -57.3 NC_003521.1 + 14404 0.67 0.905208
Target:  5'- cGGCGugUC--GCGCUCGgagaUCGCCUa -3'
miRNA:   3'- -UCGCugAGgcUGUGAGCag--AGCGGAg -5'
14006 3' -57.3 NC_003521.1 + 11556 0.67 0.89286
Target:  5'- -aCGcCUCCGGCGC-CGUCgugCGCCg- -3'
miRNA:   3'- ucGCuGAGGCUGUGaGCAGa--GCGGag -5'
14006 3' -57.3 NC_003521.1 + 93930 0.67 0.886369
Target:  5'- cGGCGACUaCCGcugccCGCcgUCGUCUgGCUUCc -3'
miRNA:   3'- -UCGCUGA-GGCu----GUG--AGCAGAgCGGAG- -5'
14006 3' -57.3 NC_003521.1 + 201464 0.67 0.886369
Target:  5'- cAGC--CUUCGACAUUC-UCUCGCCUa -3'
miRNA:   3'- -UCGcuGAGGCUGUGAGcAGAGCGGAg -5'
14006 3' -57.3 NC_003521.1 + 98856 0.68 0.882375
Target:  5'- uGCaGCUCCuGACGCUCGUCgcccagcaggugggCGCC-Ca -3'
miRNA:   3'- uCGcUGAGG-CUGUGAGCAGa-------------GCGGaG- -5'
14006 3' -57.3 NC_003521.1 + 16736 0.68 0.879672
Target:  5'- cGGCGACcgCCGGCGCgcgCGcC-CGCCg- -3'
miRNA:   3'- -UCGCUGa-GGCUGUGa--GCaGaGCGGag -5'
14006 3' -57.3 NC_003521.1 + 87400 0.67 0.915585
Target:  5'- aGGUGACgCCGACGCUCacgcccaggggaUCgUCGCCUUu -3'
miRNA:   3'- -UCGCUGaGGCUGUGAGc-----------AG-AGCGGAG- -5'
14006 3' -57.3 NC_003521.1 + 211177 0.66 0.937037
Target:  5'- cGGaGGCgCCG-CGCUCgGUCUCGuCCUCu -3'
miRNA:   3'- -UCgCUGaGGCuGUGAG-CAGAGC-GGAG- -5'
14006 3' -57.3 NC_003521.1 + 234718 0.66 0.937037
Target:  5'- uGCGugUCCGcgacucGCACgacCGUUggUGCCUCu -3'
miRNA:   3'- uCGCugAGGC------UGUGa--GCAGa-GCGGAG- -5'
14006 3' -57.3 NC_003521.1 + 116563 0.66 0.937037
Target:  5'- cGCGcCUCCGAaaaguccgaGCUgGUCUCGCg-- -3'
miRNA:   3'- uCGCuGAGGCUg--------UGAgCAGAGCGgag -5'
14006 3' -57.3 NC_003521.1 + 74717 0.66 0.937037
Target:  5'- cAGCGGCUCCcuGCucuccuGCUCGUCgUCgGUCUCc -3'
miRNA:   3'- -UCGCUGAGGc-UG------UGAGCAG-AG-CGGAG- -5'
14006 3' -57.3 NC_003521.1 + 210826 0.66 0.932281
Target:  5'- cAGCGG-UCCGugGCGCUCGUC-C-CCUCc -3'
miRNA:   3'- -UCGCUgAGGC--UGUGAGCAGaGcGGAG- -5'
14006 3' -57.3 NC_003521.1 + 224016 0.66 0.927305
Target:  5'- cAGCGGCgggcCCGGCGgUCGgggCgggCGCCgUCg -3'
miRNA:   3'- -UCGCUGa---GGCUGUgAGCa--Ga--GCGG-AG- -5'
14006 3' -57.3 NC_003521.1 + 129725 0.66 0.927305
Target:  5'- cGCGGCccgUCGACGCgagcgCGUCcgCGCCg- -3'
miRNA:   3'- uCGCUGa--GGCUGUGa----GCAGa-GCGGag -5'
14006 3' -57.3 NC_003521.1 + 69975 0.71 0.730134
Target:  5'- cGCGGagaagCCGACGCgCGUCUCGUCg- -3'
miRNA:   3'- uCGCUga---GGCUGUGaGCAGAGCGGag -5'
14006 3' -57.3 NC_003521.1 + 88436 0.69 0.827389
Target:  5'- cGCGuCUCCaggGAgACgUCGUC-CGCCUCg -3'
miRNA:   3'- uCGCuGAGG---CUgUG-AGCAGaGCGGAG- -5'
14006 3' -57.3 NC_003521.1 + 233426 0.69 0.827389
Target:  5'- cGGUGGCUCCGACGgcCUCGacgcggucccuUCUgGCCa- -3'
miRNA:   3'- -UCGCUGAGGCUGU--GAGC-----------AGAgCGGag -5'
14006 3' -57.3 NC_003521.1 + 221709 0.69 0.827389
Target:  5'- cGGCGGC-CCGcCACccgcgUCGUCUC-CCUCc -3'
miRNA:   3'- -UCGCUGaGGCuGUG-----AGCAGAGcGGAG- -5'
14006 3' -57.3 NC_003521.1 + 64534 0.69 0.827389
Target:  5'- cGCGACgacgCCGACGCcCGUCUgcUGCUgcUCa -3'
miRNA:   3'- uCGCUGa---GGCUGUGaGCAGA--GCGG--AG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.