miRNA display CGI


Results 41 - 60 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14006 3' -57.3 NC_003521.1 + 46454 0.67 0.886369
Target:  5'- cGGgGGCUggUCGGC-CUCGUCgUCGuCCUCg -3'
miRNA:   3'- -UCgCUGA--GGCUGuGAGCAG-AGC-GGAG- -5'
14006 3' -57.3 NC_003521.1 + 92589 0.67 0.886369
Target:  5'- uGGCGGCUCCGgguugggugugGCAUcCGgucCUCGCCg- -3'
miRNA:   3'- -UCGCUGAGGC-----------UGUGaGCa--GAGCGGag -5'
14006 3' -57.3 NC_003521.1 + 112370 0.67 0.886369
Target:  5'- cGGCGGCUgCGGCGuCUCGUC-CaCCUg -3'
miRNA:   3'- -UCGCUGAgGCUGU-GAGCAGaGcGGAg -5'
14006 3' -57.3 NC_003521.1 + 133582 0.67 0.886369
Target:  5'- gAGCGACaUCCcGCGCUCuUCgaGCCUCc -3'
miRNA:   3'- -UCGCUG-AGGcUGUGAGcAGagCGGAG- -5'
14006 3' -57.3 NC_003521.1 + 40938 0.67 0.886369
Target:  5'- gAGCGccaucuuaUCUGaACACgaugUCGUCUUGCCUCg -3'
miRNA:   3'- -UCGCug------AGGC-UGUG----AGCAGAGCGGAG- -5'
14006 3' -57.3 NC_003521.1 + 11556 0.67 0.89286
Target:  5'- -aCGcCUCCGGCGC-CGUCgugCGCCg- -3'
miRNA:   3'- ucGCuGAGGCUGUGaGCAGa--GCGGag -5'
14006 3' -57.3 NC_003521.1 + 137134 0.67 0.89286
Target:  5'- cGCG-UUCgGACGCUCGgaCUCGCC-Cg -3'
miRNA:   3'- uCGCuGAGgCUGUGAGCa-GAGCGGaG- -5'
14006 3' -57.3 NC_003521.1 + 122093 0.67 0.89286
Target:  5'- cAGCGACUUggucucgugCGGCugcaGCggCGUCUCGCCg- -3'
miRNA:   3'- -UCGCUGAG---------GCUG----UGa-GCAGAGCGGag -5'
14006 3' -57.3 NC_003521.1 + 190455 0.67 0.899141
Target:  5'- aAGCGGCUCCcaguuCACguagaucucgUCGUUUCGCCcCg -3'
miRNA:   3'- -UCGCUGAGGcu---GUG----------AGCAGAGCGGaG- -5'
14006 3' -57.3 NC_003521.1 + 127884 0.67 0.899141
Target:  5'- cGCGGCgugcacagCGGCAC-CGUCUCGCUg- -3'
miRNA:   3'- uCGCUGag------GCUGUGaGCAGAGCGGag -5'
14006 3' -57.3 NC_003521.1 + 28417 0.67 0.904012
Target:  5'- -aCGcCUCCGACaaccuggGCUUccacaccuccgugGUCUCGCCUCa -3'
miRNA:   3'- ucGCuGAGGCUG-------UGAG-------------CAGAGCGGAG- -5'
14006 3' -57.3 NC_003521.1 + 87951 0.67 0.905208
Target:  5'- cGCGACcugCUGACACg---CUaCGCCUCg -3'
miRNA:   3'- uCGCUGa--GGCUGUGagcaGA-GCGGAG- -5'
14006 3' -57.3 NC_003521.1 + 14404 0.67 0.905208
Target:  5'- cGGCGugUC--GCGCUCGgagaUCGCCUa -3'
miRNA:   3'- -UCGCugAGgcUGUGAGCag--AGCGGAg -5'
14006 3' -57.3 NC_003521.1 + 117241 0.67 0.91106
Target:  5'- cGGCGGCUcCCGGCGC-CG-C-CGCCa- -3'
miRNA:   3'- -UCGCUGA-GGCUGUGaGCaGaGCGGag -5'
14006 3' -57.3 NC_003521.1 + 180083 0.67 0.91106
Target:  5'- cGGCGACUgCCGcCGC-CGuUCUUGCC-Ca -3'
miRNA:   3'- -UCGCUGA-GGCuGUGaGC-AGAGCGGaG- -5'
14006 3' -57.3 NC_003521.1 + 87400 0.67 0.915585
Target:  5'- aGGUGACgCCGACGCUCacgcccaggggaUCgUCGCCUUu -3'
miRNA:   3'- -UCGCUGaGGCUGUGAGc-----------AG-AGCGGAG- -5'
14006 3' -57.3 NC_003521.1 + 16506 0.67 0.916694
Target:  5'- gAGCacgGGCUgCGGCGCUCGgCUCGgCUg -3'
miRNA:   3'- -UCG---CUGAgGCUGUGAGCaGAGCgGAg -5'
14006 3' -57.3 NC_003521.1 + 106309 0.67 0.916694
Target:  5'- aGGCGGCggCCGuGCGCaUCGcCU-GCCUCa -3'
miRNA:   3'- -UCGCUGa-GGC-UGUG-AGCaGAgCGGAG- -5'
14006 3' -57.3 NC_003521.1 + 198399 0.66 0.92577
Target:  5'- cGGCGACUCCGGCGUUUGaUUauaaugacgccgguUCGCCa- -3'
miRNA:   3'- -UCGCUGAGGCUGUGAGC-AG--------------AGCGGag -5'
14006 3' -57.3 NC_003521.1 + 224016 0.66 0.927305
Target:  5'- cAGCGGCgggcCCGGCGgUCGgggCgggCGCCgUCg -3'
miRNA:   3'- -UCGCUGa---GGCUGUgAGCa--Ga--GCGG-AG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.