Results 61 - 69 of 69 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio #
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P value |
| Predicted miRNA align pattern | |||||||
| 14006 | 3' | -57.3 | NC_003521.1 | + | 162633 | 0.71 | 0.720663 |
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Target: 5'- cGCGcccGCUCCGcACGC-CGUUUCGCCa- -3' miRNA: 3'- uCGC---UGAGGC-UGUGaGCAGAGCGGag -5' |
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| 14006 | 3' | -57.3 | NC_003521.1 | + | 95982 | 0.72 | 0.672422 |
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Target: 5'- gAGCGAuCUCCG-CugUCGUCUCccgcgGCgCUCa -3' miRNA: 3'- -UCGCU-GAGGCuGugAGCAGAG-----CG-GAG- -5' |
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| 14006 | 3' | -57.3 | NC_003521.1 | + | 223613 | 0.73 | 0.594033 |
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Target: 5'- cGCGACggCGACGCUCuucUCUCGCCa- -3' miRNA: 3'- uCGCUGagGCUGUGAGc--AGAGCGGag -5' |
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| 14006 | 3' | -57.3 | NC_003521.1 | + | 40788 | 0.73 | 0.623419 |
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Target: 5'- cGGCGACUCCGG-ACUCccggcgcgGUCagcuauUCGCCUCg -3' miRNA: 3'- -UCGCUGAGGCUgUGAG--------CAG------AGCGGAG- -5' |
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| 14006 | 3' | -57.3 | NC_003521.1 | + | 146823 | 0.73 | 0.594033 |
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Target: 5'- gAGCG-CUCCGccugucugggggGCGcCUCGUcCUCGCCUCc -3' miRNA: 3'- -UCGCuGAGGC------------UGU-GAGCA-GAGCGGAG- -5' |
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| 14006 | 3' | -57.3 | NC_003521.1 | + | 121031 | 0.73 | 0.594033 |
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Target: 5'- cGGCGGCgCCGAC-CUCGUCgccgcugCGCCg- -3' miRNA: 3'- -UCGCUGaGGCUGuGAGCAGa------GCGGag -5' |
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| 14006 | 3' | -57.3 | NC_003521.1 | + | 104048 | 0.74 | 0.536108 |
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Target: 5'- cAGUG-CUCCGACGC-CGUCUgCGCCa- -3' miRNA: 3'- -UCGCuGAGGCUGUGaGCAGA-GCGGag -5' |
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| 14006 | 3' | -57.3 | NC_003521.1 | + | 55035 | 0.75 | 0.517214 |
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Target: 5'- cGGCGGCUCCGAgAgacgCGUCUUGCgCUCc -3' miRNA: 3'- -UCGCUGAGGCUgUga--GCAGAGCG-GAG- -5' |
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| 14006 | 3' | -57.3 | NC_003521.1 | + | 189254 | 1.08 | 0.004101 |
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Target: 5'- gAGCGACUCCGACACUCGUCUCGCCUCc -3' miRNA: 3'- -UCGCUGAGGCUGUGAGCAGAGCGGAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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