Results 61 - 69 of 69 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 14006 | 3' | -57.3 | NC_003521.1 | + | 129725 | 0.66 | 0.927305 |
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Target: 5'- cGCGGCccgUCGACGCgagcgCGUCcgCGCCg- -3' miRNA: 3'- uCGCUGa--GGCUGUGa----GCAGa-GCGGag -5' |
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| 14006 | 3' | -57.3 | NC_003521.1 | + | 210826 | 0.66 | 0.932281 |
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Target: 5'- cAGCGG-UCCGugGCGCUCGUC-C-CCUCc -3' miRNA: 3'- -UCGCUgAGGC--UGUGAGCAGaGcGGAG- -5' |
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| 14006 | 3' | -57.3 | NC_003521.1 | + | 72159 | 0.66 | 0.932281 |
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Target: 5'- cAGgGAcCUCCGGCGC-CGUCggcaUGcCCUCg -3' miRNA: 3'- -UCgCU-GAGGCUGUGaGCAGa---GC-GGAG- -5' |
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| 14006 | 3' | -57.3 | NC_003521.1 | + | 211177 | 0.66 | 0.937037 |
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Target: 5'- cGGaGGCgCCG-CGCUCgGUCUCGuCCUCu -3' miRNA: 3'- -UCgCUGaGGCuGUGAG-CAGAGC-GGAG- -5' |
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| 14006 | 3' | -57.3 | NC_003521.1 | + | 234718 | 0.66 | 0.937037 |
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Target: 5'- uGCGugUCCGcgacucGCACgacCGUUggUGCCUCu -3' miRNA: 3'- uCGCugAGGC------UGUGa--GCAGa-GCGGAG- -5' |
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| 14006 | 3' | -57.3 | NC_003521.1 | + | 116563 | 0.66 | 0.937037 |
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Target: 5'- cGCGcCUCCGAaaaguccgaGCUgGUCUCGCg-- -3' miRNA: 3'- uCGCuGAGGCUg--------UGAgCAGAGCGgag -5' |
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| 14006 | 3' | -57.3 | NC_003521.1 | + | 74717 | 0.66 | 0.937037 |
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Target: 5'- cAGCGGCUCCcuGCucuccuGCUCGUCgUCgGUCUCc -3' miRNA: 3'- -UCGCUGAGGc-UG------UGAGCAG-AG-CGGAG- -5' |
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| 14006 | 3' | -57.3 | NC_003521.1 | + | 106629 | 0.66 | 0.937037 |
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Target: 5'- cAGCGcuuCUCCGACGacCUCaUCaUCGCCgUCa -3' miRNA: 3'- -UCGCu--GAGGCUGU--GAGcAG-AGCGG-AG- -5' |
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| 14006 | 3' | -57.3 | NC_003521.1 | + | 213147 | 0.66 | 0.941574 |
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Target: 5'- cGUGAuCUCCGcGCGCUCG-CUCGUgUg -3' miRNA: 3'- uCGCU-GAGGC-UGUGAGCaGAGCGgAg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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