Results 61 - 69 of 69 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
|
R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 14006 | 3' | -57.3 | NC_003521.1 | + | 210826 | 0.66 | 0.932281 |
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Target: 5'- cAGCGG-UCCGugGCGCUCGUC-C-CCUCc -3' miRNA: 3'- -UCGCUgAGGC--UGUGAGCAGaGcGGAG- -5' |
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| 14006 | 3' | -57.3 | NC_003521.1 | + | 211177 | 0.66 | 0.937037 |
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Target: 5'- cGGaGGCgCCG-CGCUCgGUCUCGuCCUCu -3' miRNA: 3'- -UCgCUGaGGCuGUGAG-CAGAGC-GGAG- -5' |
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| 14006 | 3' | -57.3 | NC_003521.1 | + | 213079 | 0.68 | 0.872771 |
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Target: 5'- gGGaCGACaUCgCGGCGCUCGuUCUCcucugucuuucuGCCUCu -3' miRNA: 3'- -UC-GCUG-AG-GCUGUGAGC-AGAG------------CGGAG- -5' |
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| 14006 | 3' | -57.3 | NC_003521.1 | + | 213147 | 0.66 | 0.941574 |
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Target: 5'- cGUGAuCUCCGcGCGCUCG-CUCGUgUg -3' miRNA: 3'- uCGCU-GAGGC-UGUGAGCaGAGCGgAg -5' |
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| 14006 | 3' | -57.3 | NC_003521.1 | + | 221709 | 0.69 | 0.827389 |
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Target: 5'- cGGCGGC-CCGcCACccgcgUCGUCUC-CCUCc -3' miRNA: 3'- -UCGCUGaGGCuGUG-----AGCAGAGcGGAG- -5' |
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| 14006 | 3' | -57.3 | NC_003521.1 | + | 223613 | 0.73 | 0.594033 |
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Target: 5'- cGCGACggCGACGCUCuucUCUCGCCa- -3' miRNA: 3'- uCGCUGagGCUGUGAGc--AGAGCGGag -5' |
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| 14006 | 3' | -57.3 | NC_003521.1 | + | 224016 | 0.66 | 0.927305 |
|
Target: 5'- cAGCGGCgggcCCGGCGgUCGgggCgggCGCCgUCg -3' miRNA: 3'- -UCGCUGa---GGCUGUgAGCa--Ga--GCGG-AG- -5' |
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| 14006 | 3' | -57.3 | NC_003521.1 | + | 233426 | 0.69 | 0.827389 |
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Target: 5'- cGGUGGCUCCGACGgcCUCGacgcggucccuUCUgGCCa- -3' miRNA: 3'- -UCGCUGAGGCUGU--GAGC-----------AGAgCGGag -5' |
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| 14006 | 3' | -57.3 | NC_003521.1 | + | 234718 | 0.66 | 0.937037 |
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Target: 5'- uGCGugUCCGcgacucGCACgacCGUUggUGCCUCu -3' miRNA: 3'- uCGCugAGGC------UGUGa--GCAGa-GCGGAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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