Results 61 - 69 of 69 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. |
strand
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Start Position | R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 14006 | 3' | -57.3 | NC_003521.1 | + | 76873 | 0.68 | 0.843238 |
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Target: 5'- cGGCGuccGCggCCGAgACUCcucCUCGCCUCu -3' miRNA: 3'- -UCGC---UGa-GGCUgUGAGca-GAGCGGAG- -5' |
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| 14006 | 3' | -57.3 | NC_003521.1 | + | 27773 | 0.69 | 0.822505 |
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Target: 5'- gAGCGcggaggaagaaaccuACUCCGGCccGCUCGgccggCUCGCC-Cg -3' miRNA: 3'- -UCGC---------------UGAGGCUG--UGAGCa----GAGCGGaG- -5' |
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| 14006 | 3' | -57.3 | NC_003521.1 | + | 138037 | 0.69 | 0.819217 |
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Target: 5'- uGGCGGCcgCCGGCGC-CGUCaUCGCg-- -3' miRNA: 3'- -UCGCUGa-GGCUGUGaGCAG-AGCGgag -5' |
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| 14006 | 3' | -57.3 | NC_003521.1 | + | 36818 | 0.69 | 0.803264 |
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Target: 5'- cGGCgGACUCgGGCaugaGCUCGUCguccaugucguccuaCGCCUCg -3' miRNA: 3'- -UCG-CUGAGgCUG----UGAGCAGa--------------GCGGAG- -5' |
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| 14006 | 3' | -57.3 | NC_003521.1 | + | 121366 | 0.69 | 0.802409 |
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Target: 5'- cGCGGCUUC-ACACU-GUCgCGCCUCc -3' miRNA: 3'- uCGCUGAGGcUGUGAgCAGaGCGGAG- -5' |
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| 14006 | 3' | -57.3 | NC_003521.1 | + | 140567 | 0.7 | 0.785035 |
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Target: 5'- cGGCGGCggCGACAgCUCGUCgUCGggcaCCUCg -3' miRNA: 3'- -UCGCUGagGCUGU-GAGCAG-AGC----GGAG- -5' |
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| 14006 | 3' | -57.3 | NC_003521.1 | + | 26920 | 0.7 | 0.776154 |
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Target: 5'- cGCG-CUCCaGACACgcucgCGaCUCGCCUUc -3' miRNA: 3'- uCGCuGAGG-CUGUGa----GCaGAGCGGAG- -5' |
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| 14006 | 3' | -57.3 | NC_003521.1 | + | 223613 | 0.73 | 0.594033 |
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Target: 5'- cGCGACggCGACGCUCuucUCUCGCCa- -3' miRNA: 3'- uCGCUGagGCUGUGAGc--AGAGCGGag -5' |
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| 14006 | 3' | -57.3 | NC_003521.1 | + | 189254 | 1.08 | 0.004101 |
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Target: 5'- gAGCGACUCCGACACUCGUCUCGCCUCc -3' miRNA: 3'- -UCGCUGAGGCUGUGAGCAGAGCGGAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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