Results 61 - 69 of 69 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. |
strand
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Start Position | R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 14006 | 3' | -57.3 | NC_003521.1 | + | 40938 | 0.67 | 0.886369 |
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Target: 5'- gAGCGccaucuuaUCUGaACACgaugUCGUCUUGCCUCg -3' miRNA: 3'- -UCGCug------AGGC-UGUG----AGCAGAGCGGAG- -5' |
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| 14006 | 3' | -57.3 | NC_003521.1 | + | 55035 | 0.75 | 0.517214 |
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Target: 5'- cGGCGGCUCCGAgAgacgCGUCUUGCgCUCc -3' miRNA: 3'- -UCGCUGAGGCUgUga--GCAGAGCG-GAG- -5' |
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| 14006 | 3' | -57.3 | NC_003521.1 | + | 112370 | 0.67 | 0.886369 |
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Target: 5'- cGGCGGCUgCGGCGuCUCGUC-CaCCUg -3' miRNA: 3'- -UCGCUGAgGCUGU-GAGCAGaGcGGAg -5' |
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| 14006 | 3' | -57.3 | NC_003521.1 | + | 92589 | 0.67 | 0.886369 |
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Target: 5'- uGGCGGCUCCGgguugggugugGCAUcCGgucCUCGCCg- -3' miRNA: 3'- -UCGCUGAGGC-----------UGUGaGCa--GAGCGGag -5' |
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| 14006 | 3' | -57.3 | NC_003521.1 | + | 46454 | 0.67 | 0.886369 |
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Target: 5'- cGGgGGCUggUCGGC-CUCGUCgUCGuCCUCg -3' miRNA: 3'- -UCgCUGA--GGCUGuGAGCAG-AGC-GGAG- -5' |
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| 14006 | 3' | -57.3 | NC_003521.1 | + | 113760 | 0.68 | 0.865673 |
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Target: 5'- cGGUGGCccugcCCGGCACcgCGUCUCcauCCUCg -3' miRNA: 3'- -UCGCUGa----GGCUGUGa-GCAGAGc--GGAG- -5' |
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| 14006 | 3' | -57.3 | NC_003521.1 | + | 145279 | 0.68 | 0.85838 |
|
Target: 5'- cGGCGGCcagCUcGCGCgccggCGUCUCGCCg- -3' miRNA: 3'- -UCGCUGa--GGcUGUGa----GCAGAGCGGag -5' |
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| 14006 | 3' | -57.3 | NC_003521.1 | + | 131464 | 0.68 | 0.843238 |
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Target: 5'- cGCG-CUCuCGGC-CUCGUCg-GCCUCc -3' miRNA: 3'- uCGCuGAG-GCUGuGAGCAGagCGGAG- -5' |
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| 14006 | 3' | -57.3 | NC_003521.1 | + | 196461 | 0.68 | 0.843238 |
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Target: 5'- cGCGAacCUCCGcugGCACUCGgcccgUUCcGCCUCc -3' miRNA: 3'- uCGCU--GAGGC---UGUGAGCa----GAG-CGGAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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