miRNA display CGI


Results 1 - 20 of 21 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14006 5' -51.5 NC_003521.1 + 50232 0.66 0.996975
Target:  5'- cAGGUcGCGGGgCCACUccUCGcccucGAUCACg -3'
miRNA:   3'- uUCUA-CGCCUgGGUGA--AGUa----CUAGUG- -5'
14006 5' -51.5 NC_003521.1 + 219848 0.66 0.996975
Target:  5'- --aGUGCGGGCCCGagagCAUGAggaUCAg -3'
miRNA:   3'- uucUACGCCUGGGUgaa-GUACU---AGUg -5'
14006 5' -51.5 NC_003521.1 + 178302 0.66 0.996443
Target:  5'- gAAGAUGaGGuCCUGCggggUgAUGAUCACg -3'
miRNA:   3'- -UUCUACgCCuGGGUGa---AgUACUAGUG- -5'
14006 5' -51.5 NC_003521.1 + 195604 0.66 0.996443
Target:  5'- cAGGUGCGcagccGGCCCGCcagC-UGGUCGCg -3'
miRNA:   3'- uUCUACGC-----CUGGGUGaa-GuACUAGUG- -5'
14006 5' -51.5 NC_003521.1 + 59754 0.66 0.996443
Target:  5'- ----gGcCGGACCUggugagcaGCUUCGUGAUCAg -3'
miRNA:   3'- uucuaC-GCCUGGG--------UGAAGUACUAGUg -5'
14006 5' -51.5 NC_003521.1 + 6868 0.66 0.995837
Target:  5'- uGGGUaGCGGAUCCGuCgucgUCGUGGUUAUc -3'
miRNA:   3'- uUCUA-CGCCUGGGU-Ga---AGUACUAGUG- -5'
14006 5' -51.5 NC_003521.1 + 106685 0.66 0.995837
Target:  5'- cGAGAUGCacgccAUCCACUUCAgGGUCAg -3'
miRNA:   3'- -UUCUACGcc---UGGGUGAAGUaCUAGUg -5'
14006 5' -51.5 NC_003521.1 + 233634 0.66 0.995837
Target:  5'- uGAGG-GCGu-CCCGCUUCAUGAUguCc -3'
miRNA:   3'- -UUCUaCGCcuGGGUGAAGUACUAguG- -5'
14006 5' -51.5 NC_003521.1 + 131818 0.66 0.99522
Target:  5'- ----cGCGGACCCACUaccUCAUGcuguugaaaaacggCACg -3'
miRNA:   3'- uucuaCGCCUGGGUGA---AGUACua------------GUG- -5'
14006 5' -51.5 NC_003521.1 + 174196 0.67 0.991412
Target:  5'- cAGGUGCGacgcGCCCACgUUggGGUCGCg -3'
miRNA:   3'- uUCUACGCc---UGGGUGaAGuaCUAGUG- -5'
14006 5' -51.5 NC_003521.1 + 110014 0.67 0.990191
Target:  5'- gGAGAUGUGcACCCGgCUcUCGUGggCGCg -3'
miRNA:   3'- -UUCUACGCcUGGGU-GA-AGUACuaGUG- -5'
14006 5' -51.5 NC_003521.1 + 87152 0.68 0.97746
Target:  5'- uGGA-GCGGGCgCAgUUCGUGcgCGCg -3'
miRNA:   3'- uUCUaCGCCUGgGUgAAGUACuaGUG- -5'
14006 5' -51.5 NC_003521.1 + 190551 0.69 0.975201
Target:  5'- cAGcgGCGGACCCGgCUgcagcggcaguacggCGUGAUCGa -3'
miRNA:   3'- uUCuaCGCCUGGGU-GAa--------------GUACUAGUg -5'
14006 5' -51.5 NC_003521.1 + 135591 0.69 0.972222
Target:  5'- cAGGAUGCuGGCCCGCUUUuucuUGA-CGCc -3'
miRNA:   3'- -UUCUACGcCUGGGUGAAGu---ACUaGUG- -5'
14006 5' -51.5 NC_003521.1 + 144893 0.7 0.942542
Target:  5'- cAAGAugcUGCGGGCCCACggCAUGccgGUgGCc -3'
miRNA:   3'- -UUCU---ACGCCUGGGUGaaGUAC---UAgUG- -5'
14006 5' -51.5 NC_003521.1 + 6058 0.71 0.927481
Target:  5'- ----aGCGGcCCCGCagggCGUGAUCACg -3'
miRNA:   3'- uucuaCGCCuGGGUGaa--GUACUAGUG- -5'
14006 5' -51.5 NC_003521.1 + 213826 0.71 0.921966
Target:  5'- -cGAUGcCGuGGCCCGCUUCAUcauUCGCa -3'
miRNA:   3'- uuCUAC-GC-CUGGGUGAAGUAcu-AGUG- -5'
14006 5' -51.5 NC_003521.1 + 89547 0.72 0.910192
Target:  5'- cAGGcUGCGGGCCCACUcgucgcgcuccUCGUcGUCGCc -3'
miRNA:   3'- -UUCuACGCCUGGGUGA-----------AGUAcUAGUG- -5'
14006 5' -51.5 NC_003521.1 + 125026 0.72 0.909578
Target:  5'- uGAGcgGCGGACUgcugacgCGCUUCGUGcgccGUCACa -3'
miRNA:   3'- -UUCuaCGCCUGG-------GUGAAGUAC----UAGUG- -5'
14006 5' -51.5 NC_003521.1 + 155819 0.77 0.653431
Target:  5'- cAAGGUGCGGGCCUGCgUCAUcGGUUACc -3'
miRNA:   3'- -UUCUACGCCUGGGUGaAGUA-CUAGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.