miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14007 3' -53.8 NC_003521.1 + 103899 0.65 0.991569
Target:  5'- gCCGCGCgGUcagguaacGGGAGAGauuGAgcacgucguugucGACCGCGa -3'
miRNA:   3'- -GGUGCGaCA--------CCCUCUU---CU-------------UUGGCGCa -5'
14007 3' -53.8 NC_003521.1 + 153897 0.66 0.990535
Target:  5'- gCGCGCgGUaGGGGAAcagcGCCGCGUg -3'
miRNA:   3'- gGUGCGaCAcCCUCUUcuu-UGGCGCA- -5'
14007 3' -53.8 NC_003521.1 + 201521 0.66 0.990535
Target:  5'- gCgAUGCUGccUGGGAGAGuguGAcGCCGCu- -3'
miRNA:   3'- -GgUGCGAC--ACCCUCUU---CUuUGGCGca -5'
14007 3' -53.8 NC_003521.1 + 122800 0.66 0.990535
Target:  5'- cCCugGCg--GGcGGcGAAGAGAUCGCGc -3'
miRNA:   3'- -GGugCGacaCC-CU-CUUCUUUGGCGCa -5'
14007 3' -53.8 NC_003521.1 + 217456 0.66 0.990535
Target:  5'- aUACGUUaccGUGGGAGAAGuucuGCCaCGUc -3'
miRNA:   3'- gGUGCGA---CACCCUCUUCuu--UGGcGCA- -5'
14007 3' -53.8 NC_003521.1 + 62452 0.66 0.990535
Target:  5'- gCCGCGCgcgcacgGGGAuuuuuGGAAACCGCc- -3'
miRNA:   3'- -GGUGCGaca----CCCUcu---UCUUUGGCGca -5'
14007 3' -53.8 NC_003521.1 + 98456 0.66 0.990535
Target:  5'- gCUACGUUG-GaGGAGgcGGcggcGGCCGCGg -3'
miRNA:   3'- -GGUGCGACaC-CCUCuuCU----UUGGCGCa -5'
14007 3' -53.8 NC_003521.1 + 174015 0.66 0.990535
Target:  5'- -gGgGgaGagaUGGGAGAGGAGACgGCGg -3'
miRNA:   3'- ggUgCgaC---ACCCUCUUCUUUGgCGCa -5'
14007 3' -53.8 NC_003521.1 + 100418 0.66 0.989272
Target:  5'- ---gGUgaugGUGGuGAGAAGAAGCgGCGg -3'
miRNA:   3'- ggugCGa---CACC-CUCUUCUUUGgCGCa -5'
14007 3' -53.8 NC_003521.1 + 91351 0.66 0.989272
Target:  5'- gCugGUcgggaggacgGUGGGGGAGGggGCCGa-- -3'
miRNA:   3'- gGugCGa---------CACCCUCUUCuuUGGCgca -5'
14007 3' -53.8 NC_003521.1 + 164736 0.66 0.989272
Target:  5'- aCCACcaGCgc-GGGAGggGGGcAUCGCGg -3'
miRNA:   3'- -GGUG--CGacaCCCUCuuCUU-UGGCGCa -5'
14007 3' -53.8 NC_003521.1 + 90965 0.66 0.989272
Target:  5'- --gUGgUGUGGGcgGGAGGAGGCgGCGa -3'
miRNA:   3'- gguGCgACACCC--UCUUCUUUGgCGCa -5'
14007 3' -53.8 NC_003521.1 + 65820 0.66 0.989272
Target:  5'- gUCAgGCUGgGGGuGGAGAGacaGCUGUGg -3'
miRNA:   3'- -GGUgCGACaCCCuCUUCUU---UGGCGCa -5'
14007 3' -53.8 NC_003521.1 + 17632 0.66 0.989272
Target:  5'- aCC-CGCUG-GGaGGAAGAGaacACCGUGa -3'
miRNA:   3'- -GGuGCGACaCCcUCUUCUU---UGGCGCa -5'
14007 3' -53.8 NC_003521.1 + 37533 0.66 0.987882
Target:  5'- uCCugGggGUGGGcAGcGGGggUCGCGg -3'
miRNA:   3'- -GGugCgaCACCC-UCuUCUuuGGCGCa -5'
14007 3' -53.8 NC_003521.1 + 211299 0.66 0.987882
Target:  5'- gCAUGCg--GGGuAGAcAGAGAUCGCGg -3'
miRNA:   3'- gGUGCGacaCCC-UCU-UCUUUGGCGCa -5'
14007 3' -53.8 NC_003521.1 + 49607 0.66 0.986356
Target:  5'- aCCgGCGCUG-GGGAcgcgGAGGAcACgGCGa -3'
miRNA:   3'- -GG-UGCGACaCCCU----CUUCUuUGgCGCa -5'
14007 3' -53.8 NC_003521.1 + 110314 0.66 0.984687
Target:  5'- gUCGCGCUGguagGGGGccuuGAAGGccaCGCGUg -3'
miRNA:   3'- -GGUGCGACa---CCCU----CUUCUuugGCGCA- -5'
14007 3' -53.8 NC_003521.1 + 201181 0.66 0.984687
Target:  5'- gCCAUGCgcaaGUGGGcGcaacGAGAGGCCgGCGg -3'
miRNA:   3'- -GGUGCGa---CACCCuC----UUCUUUGG-CGCa -5'
14007 3' -53.8 NC_003521.1 + 954 0.66 0.984687
Target:  5'- gCCAUGCgcaaGUGGGcGcaacGAGAGGCCgGCGg -3'
miRNA:   3'- -GGUGCGa---CACCCuC----UUCUUUGG-CGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.