miRNA display CGI


Results 1 - 20 of 242 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14007 5' -49.7 NC_003521.1 + 78652 0.65 0.999772
Target:  5'- aUGACGaugucguCGGGcUUCUcGGCGCAGgggaAGCCg -3'
miRNA:   3'- -ACUGU-------GCCUaAAGA-CUGCGUCg---UUGG- -5'
14007 5' -49.7 NC_003521.1 + 218456 0.65 0.999772
Target:  5'- gGACAUGGccggcaccacgccGUg---GGCGCAGUGGCCc -3'
miRNA:   3'- aCUGUGCC-------------UAaagaCUGCGUCGUUGG- -5'
14007 5' -49.7 NC_003521.1 + 1870 0.66 0.999749
Target:  5'- cGGCGCcucuaauaccgcagCUGGCGCAGguACCg -3'
miRNA:   3'- aCUGUGccuaaa--------GACUGCGUCguUGG- -5'
14007 5' -49.7 NC_003521.1 + 202097 0.66 0.999749
Target:  5'- cGGCGCcucuaauaccgcagCUGGCGCAGguACCg -3'
miRNA:   3'- aCUGUGccuaaa--------GACUGCGUCguUGG- -5'
14007 5' -49.7 NC_003521.1 + 115260 0.66 0.999725
Target:  5'- gGGCACGGAacaacugaUcgaaaacccgugccgUCUGACGCAGgAAgCg -3'
miRNA:   3'- aCUGUGCCU--------Aa--------------AGACUGCGUCgUUgG- -5'
14007 5' -49.7 NC_003521.1 + 38997 0.66 0.999718
Target:  5'- aGGCGCuGGUggaUgUGGCGCuGCAcgGCCg -3'
miRNA:   3'- aCUGUGcCUAa--AgACUGCGuCGU--UGG- -5'
14007 5' -49.7 NC_003521.1 + 165636 0.66 0.999718
Target:  5'- gUGaACACGGug--UUGA-GCAGCAGCa -3'
miRNA:   3'- -AC-UGUGCCuaaaGACUgCGUCGUUGg -5'
14007 5' -49.7 NC_003521.1 + 166216 0.66 0.999718
Target:  5'- uUGGCGCGGcgg-CgaGGCGCGcCGGCCg -3'
miRNA:   3'- -ACUGUGCCuaaaGa-CUGCGUcGUUGG- -5'
14007 5' -49.7 NC_003521.1 + 155164 0.66 0.999718
Target:  5'- cGGCuCGGAacagCUGGCggccGCGGCuGCCg -3'
miRNA:   3'- aCUGuGCCUaaa-GACUG----CGUCGuUGG- -5'
14007 5' -49.7 NC_003521.1 + 155573 0.66 0.999718
Target:  5'- cGGCGCaGGAgg--UGGUGCAGCAGCa -3'
miRNA:   3'- aCUGUG-CCUaaagACUGCGUCGUUGg -5'
14007 5' -49.7 NC_003521.1 + 29847 0.66 0.999718
Target:  5'- -uGCACGGAcugUUCacgcccggGACGCAGaagGCCg -3'
miRNA:   3'- acUGUGCCUa--AAGa-------CUGCGUCgu-UGG- -5'
14007 5' -49.7 NC_003521.1 + 42193 0.66 0.999718
Target:  5'- -aGCACGGcGUUUCccugGGC-CAGCGGCUg -3'
miRNA:   3'- acUGUGCC-UAAAGa---CUGcGUCGUUGG- -5'
14007 5' -49.7 NC_003521.1 + 239225 0.66 0.999718
Target:  5'- aGGCGCuGGUggaUgUGGCGCuGCAcgGCCg -3'
miRNA:   3'- aCUGUGcCUAa--AgACUGCGuCGU--UGG- -5'
14007 5' -49.7 NC_003521.1 + 164792 0.66 0.999718
Target:  5'- gGGCACGGGUcgUCgggGACGaucccggAGCGcCCg -3'
miRNA:   3'- aCUGUGCCUAa-AGa--CUGCg------UCGUuGG- -5'
14007 5' -49.7 NC_003521.1 + 138043 0.66 0.999718
Target:  5'- -cGCACGGGg--CUGuggguCGCccGCGACCg -3'
miRNA:   3'- acUGUGCCUaaaGACu----GCGu-CGUUGG- -5'
14007 5' -49.7 NC_003521.1 + 98129 0.66 0.999718
Target:  5'- cGGCAgCGGAg-UCcGugGUAGCugcuGCCg -3'
miRNA:   3'- aCUGU-GCCUaaAGaCugCGUCGu---UGG- -5'
14007 5' -49.7 NC_003521.1 + 206990 0.66 0.999712
Target:  5'- aUGACgccccagGCGGGUccUUCgcaGACGCAGUuGCUc -3'
miRNA:   3'- -ACUG-------UGCCUA--AAGa--CUGCGUCGuUGG- -5'
14007 5' -49.7 NC_003521.1 + 98406 0.66 0.999712
Target:  5'- cGACGCuGGUgg-UGACGUuggccagGGCGGCCa -3'
miRNA:   3'- aCUGUGcCUAaagACUGCG-------UCGUUGG- -5'
14007 5' -49.7 NC_003521.1 + 123694 0.66 0.999691
Target:  5'- cGugGCGGuggaagagGAgGCGGCGGCUg -3'
miRNA:   3'- aCugUGCCuaaaga--CUgCGUCGUUGG- -5'
14007 5' -49.7 NC_003521.1 + 115821 0.66 0.999677
Target:  5'- aGGCGCGGGUggcucagcaggcgCUGGCucaggcggGCGGCGcacGCCu -3'
miRNA:   3'- aCUGUGCCUAaa-----------GACUG--------CGUCGU---UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.