Results 1 - 20 of 242 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14007 | 5' | -49.7 | NC_003521.1 | + | 78652 | 0.65 | 0.999772 |
Target: 5'- aUGACGaugucguCGGGcUUCUcGGCGCAGgggaAGCCg -3' miRNA: 3'- -ACUGU-------GCCUaAAGA-CUGCGUCg---UUGG- -5' |
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14007 | 5' | -49.7 | NC_003521.1 | + | 218456 | 0.65 | 0.999772 |
Target: 5'- gGACAUGGccggcaccacgccGUg---GGCGCAGUGGCCc -3' miRNA: 3'- aCUGUGCC-------------UAaagaCUGCGUCGUUGG- -5' |
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14007 | 5' | -49.7 | NC_003521.1 | + | 103212 | 0.66 | 0.999647 |
Target: 5'- aUGACcUGGAUgaggUCgccGGCcagGCGGCGGCCc -3' miRNA: 3'- -ACUGuGCCUAa---AGa--CUG---CGUCGUUGG- -5' |
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14007 | 5' | -49.7 | NC_003521.1 | + | 160506 | 0.66 | 0.999647 |
Target: 5'- aGACcgcgGCGGGaggagGGgGCGGCAGCCu -3' miRNA: 3'- aCUG----UGCCUaaagaCUgCGUCGUUGG- -5' |
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14007 | 5' | -49.7 | NC_003521.1 | + | 20440 | 0.66 | 0.999647 |
Target: 5'- cGGCACGGAgaUUCguaauuuuacagUGAUGCAGUAcaACa -3' miRNA: 3'- aCUGUGCCUa-AAG------------ACUGCGUCGU--UGg -5' |
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14007 | 5' | -49.7 | NC_003521.1 | + | 102774 | 0.66 | 0.99954 |
Target: 5'- cGGCAgCGGcugcgcgaUGACGCgccGGCGGCCg -3' miRNA: 3'- aCUGU-GCCuaaag---ACUGCG---UCGUUGG- -5' |
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14007 | 5' | -49.7 | NC_003521.1 | + | 145582 | 0.66 | 0.999559 |
Target: 5'- ---uGCGGcggcacGACGCGGCGGCCg -3' miRNA: 3'- acugUGCCuaaagaCUGCGUCGUUGG- -5' |
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14007 | 5' | -49.7 | NC_003521.1 | + | 65296 | 0.66 | 0.999454 |
Target: 5'- -uGCugGGGgcgCUGuCGCAGCu-CCg -3' miRNA: 3'- acUGugCCUaaaGACuGCGUCGuuGG- -5' |
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14007 | 5' | -49.7 | NC_003521.1 | + | 172807 | 0.66 | 0.999454 |
Target: 5'- cGugGCGGugaggCUcACGCAGCugggGGCCg -3' miRNA: 3'- aCugUGCCuaaa-GAcUGCGUCG----UUGG- -5' |
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14007 | 5' | -49.7 | NC_003521.1 | + | 55520 | 0.66 | 0.999559 |
Target: 5'- uUGAcCACGGGUac---GCGCAGCGagcGCCg -3' miRNA: 3'- -ACU-GUGCCUAaagacUGCGUCGU---UGG- -5' |
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14007 | 5' | -49.7 | NC_003521.1 | + | 80970 | 0.66 | 0.999454 |
Target: 5'- aUGACgACGGGgcgCgaguaGCAGCGGCCc -3' miRNA: 3'- -ACUG-UGCCUaaaGacug-CGUCGUUGG- -5' |
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14007 | 5' | -49.7 | NC_003521.1 | + | 6381 | 0.66 | 0.999559 |
Target: 5'- gGuCGCGGAgg---GGCGCcGCAGCUa -3' miRNA: 3'- aCuGUGCCUaaagaCUGCGuCGUUGG- -5' |
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14007 | 5' | -49.7 | NC_003521.1 | + | 1870 | 0.66 | 0.999749 |
Target: 5'- cGGCGCcucuaauaccgcagCUGGCGCAGguACCg -3' miRNA: 3'- aCUGUGccuaaa--------GACUGCGUCguUGG- -5' |
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14007 | 5' | -49.7 | NC_003521.1 | + | 100004 | 0.66 | 0.999454 |
Target: 5'- cGGCGaaGAUcUUCUccaccaccagacGACGCAGCAGCg -3' miRNA: 3'- aCUGUgcCUA-AAGA------------CUGCGUCGUUGg -5' |
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14007 | 5' | -49.7 | NC_003521.1 | + | 65626 | 0.66 | 0.999647 |
Target: 5'- cGGCcCGcGAggagCUGACGCGcGcCAGCCa -3' miRNA: 3'- aCUGuGC-CUaaa-GACUGCGU-C-GUUGG- -5' |
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14007 | 5' | -49.7 | NC_003521.1 | + | 38444 | 0.66 | 0.999498 |
Target: 5'- gUGACACGGGUgacgaugaaaccgucUgggcUCUGGCGguGgGcGCCg -3' miRNA: 3'- -ACUGUGCCUA---------------A----AGACUGCguCgU-UGG- -5' |
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14007 | 5' | -49.7 | NC_003521.1 | + | 115821 | 0.66 | 0.999677 |
Target: 5'- aGGCGCGGGUggcucagcaggcgCUGGCucaggcggGCGGCGcacGCCu -3' miRNA: 3'- aCUGUGCCUAaa-----------GACUG--------CGUCGU---UGG- -5' |
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14007 | 5' | -49.7 | NC_003521.1 | + | 37043 | 0.66 | 0.999647 |
Target: 5'- gGAUACGGugugCgugGACGCcgaaaaccGGCAGCUg -3' miRNA: 3'- aCUGUGCCuaaaGa--CUGCG--------UCGUUGG- -5' |
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14007 | 5' | -49.7 | NC_003521.1 | + | 25549 | 0.66 | 0.999647 |
Target: 5'- cGACgGCGGAcg-CUGuugUGCAgGCGGCCg -3' miRNA: 3'- aCUG-UGCCUaaaGACu--GCGU-CGUUGG- -5' |
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14007 | 5' | -49.7 | NC_003521.1 | + | 138712 | 0.66 | 0.999454 |
Target: 5'- cGGCACGGGcgcuggCUGGUGguGCGuCCg -3' miRNA: 3'- aCUGUGCCUaaa---GACUGCguCGUuGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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