miRNA display CGI


Results 61 - 80 of 242 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14007 5' -49.7 NC_003521.1 + 47638 0.67 0.998996
Target:  5'- cGugACGGcggcUCUGGCGgCAGCuGCg -3'
miRNA:   3'- aCugUGCCuaa-AGACUGC-GUCGuUGg -5'
14007 5' -49.7 NC_003521.1 + 72178 0.67 0.998784
Target:  5'- cGGCAUGcccucGAUgaccgUGGCGCAGCAGCa -3'
miRNA:   3'- aCUGUGC-----CUAaag--ACUGCGUCGUUGg -5'
14007 5' -49.7 NC_003521.1 + 107319 0.67 0.999327
Target:  5'- cGcCGCGGGUUg--GGCcccGCAGCAGCg -3'
miRNA:   3'- aCuGUGCCUAAagaCUG---CGUCGUUGg -5'
14007 5' -49.7 NC_003521.1 + 213889 0.67 0.998784
Target:  5'- gGGCGCGGAg--CUc-CGCuuguGCAACCu -3'
miRNA:   3'- aCUGUGCCUaaaGAcuGCGu---CGUUGG- -5'
14007 5' -49.7 NC_003521.1 + 100502 0.67 0.998784
Target:  5'- cGACGCGGugg---GACGCcugaAGCGACg -3'
miRNA:   3'- aCUGUGCCuaaagaCUGCG----UCGUUGg -5'
14007 5' -49.7 NC_003521.1 + 166632 0.67 0.998639
Target:  5'- cGGCGuCGGGccgCgcgccgggcgccgcGGCGCAGCGGCCa -3'
miRNA:   3'- aCUGU-GCCUaaaGa-------------CUGCGUCGUUGG- -5'
14007 5' -49.7 NC_003521.1 + 166117 0.67 0.998535
Target:  5'- -aGCAgGGAgccgCUGcCGCGGCGccGCCg -3'
miRNA:   3'- acUGUgCCUaaa-GACuGCGUCGU--UGG- -5'
14007 5' -49.7 NC_003521.1 + 127062 0.67 0.998535
Target:  5'- aGACGCGG-----UGcCGCGGCAggGCCa -3'
miRNA:   3'- aCUGUGCCuaaagACuGCGUCGU--UGG- -5'
14007 5' -49.7 NC_003521.1 + 115796 0.67 0.998535
Target:  5'- -cGCGCGGAUacccgCgGAUGC-GCAGCCu -3'
miRNA:   3'- acUGUGCCUAaa---GaCUGCGuCGUUGG- -5'
14007 5' -49.7 NC_003521.1 + 4461 0.67 0.998996
Target:  5'- cGAUGCGGcugacggUCUGG-GCGGCGAUCc -3'
miRNA:   3'- aCUGUGCCuaa----AGACUgCGUCGUUGG- -5'
14007 5' -49.7 NC_003521.1 + 104096 0.67 0.998996
Target:  5'- gGACGCGGAaggC-GGCGC-GCuGCCa -3'
miRNA:   3'- aCUGUGCCUaaaGaCUGCGuCGuUGG- -5'
14007 5' -49.7 NC_003521.1 + 66869 0.67 0.999327
Target:  5'- gGGCACGGuga-CUGugGCcgaGACCa -3'
miRNA:   3'- aCUGUGCCuaaaGACugCGucgUUGG- -5'
14007 5' -49.7 NC_003521.1 + 17910 0.67 0.999299
Target:  5'- cGACugGGAgacggacgggCUGuACGaGGUAGCCa -3'
miRNA:   3'- aCUGugCCUaaa-------GAC-UGCgUCGUUGG- -5'
14007 5' -49.7 NC_003521.1 + 139651 0.67 0.999176
Target:  5'- gGGCGCGGAcgccgUCUgaggagaggGACGCAGaccgcGCCg -3'
miRNA:   3'- aCUGUGCCUaa---AGA---------CUGCGUCgu---UGG- -5'
14007 5' -49.7 NC_003521.1 + 127963 0.67 0.999176
Target:  5'- aGcCGCGGGagcagCUGGgGCAGCucgGCCa -3'
miRNA:   3'- aCuGUGCCUaaa--GACUgCGUCGu--UGG- -5'
14007 5' -49.7 NC_003521.1 + 109251 0.67 0.999176
Target:  5'- aGACGaaGGUg-CUGACGguGCAgGCCg -3'
miRNA:   3'- aCUGUgcCUAaaGACUGCguCGU-UGG- -5'
14007 5' -49.7 NC_003521.1 + 94821 0.67 0.999176
Target:  5'- gUGGCGCGGAU---UGACaaaagccgGCAGCGggaagcgcGCCa -3'
miRNA:   3'- -ACUGUGCCUAaagACUG--------CGUCGU--------UGG- -5'
14007 5' -49.7 NC_003521.1 + 92627 0.67 0.998996
Target:  5'- cGACGCuG-UUUCUGGacuCGguGCAGCUg -3'
miRNA:   3'- aCUGUGcCuAAAGACU---GCguCGUUGG- -5'
14007 5' -49.7 NC_003521.1 + 166804 0.67 0.998996
Target:  5'- gUGACGCGGcgguagagCUcGCGCAGUA-CCa -3'
miRNA:   3'- -ACUGUGCCuaaa----GAcUGCGUCGUuGG- -5'
14007 5' -49.7 NC_003521.1 + 141097 0.67 0.998996
Target:  5'- cGGCugGGugcgCgacGACGCcuGCGACCu -3'
miRNA:   3'- aCUGugCCuaaaGa--CUGCGu-CGUUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.