miRNA display CGI


Results 81 - 100 of 242 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14007 5' -49.7 NC_003521.1 + 107319 0.67 0.999327
Target:  5'- cGcCGCGGGUUg--GGCcccGCAGCAGCg -3'
miRNA:   3'- aCuGUGCCUAAagaCUG---CGUCGUUGg -5'
14007 5' -49.7 NC_003521.1 + 17910 0.67 0.999299
Target:  5'- cGACugGGAgacggacgggCUGuACGaGGUAGCCa -3'
miRNA:   3'- aCUGugCCUaaa-------GAC-UGCgUCGUUGG- -5'
14007 5' -49.7 NC_003521.1 + 213889 0.67 0.998784
Target:  5'- gGGCGCGGAg--CUc-CGCuuguGCAACCu -3'
miRNA:   3'- aCUGUGCCUaaaGAcuGCGu---CGUUGG- -5'
14007 5' -49.7 NC_003521.1 + 166804 0.67 0.998996
Target:  5'- gUGACGCGGcgguagagCUcGCGCAGUA-CCa -3'
miRNA:   3'- -ACUGUGCCuaaa----GAcUGCGUCGUuGG- -5'
14007 5' -49.7 NC_003521.1 + 98263 0.67 0.999176
Target:  5'- gGGCACGGcgagcCUGGCG-GGCGACa -3'
miRNA:   3'- aCUGUGCCuaaa-GACUGCgUCGUUGg -5'
14007 5' -49.7 NC_003521.1 + 139651 0.67 0.999176
Target:  5'- gGGCGCGGAcgccgUCUgaggagaggGACGCAGaccgcGCCg -3'
miRNA:   3'- aCUGUGCCUaa---AGA---------CUGCGUCgu---UGG- -5'
14007 5' -49.7 NC_003521.1 + 44308 0.67 0.998996
Target:  5'- gUGACguACGGGgugCUGAaGCAGguGCUg -3'
miRNA:   3'- -ACUG--UGCCUaaaGACUgCGUCguUGG- -5'
14007 5' -49.7 NC_003521.1 + 131374 0.67 0.998956
Target:  5'- cGGCAUGGAgUUCgccgaggugacgGGCGuCAGCcugGACCg -3'
miRNA:   3'- aCUGUGCCUaAAGa-----------CUGC-GUCG---UUGG- -5'
14007 5' -49.7 NC_003521.1 + 209573 0.67 0.998535
Target:  5'- gGugGCGGGggUCcgggGGCGCAcGUAGCg -3'
miRNA:   3'- aCugUGCCUaaAGa---CUGCGU-CGUUGg -5'
14007 5' -49.7 NC_003521.1 + 74576 0.67 0.998535
Target:  5'- cGGCgACGGAg--CggcGGCGCGGCGuCCc -3'
miRNA:   3'- aCUG-UGCCUaaaGa--CUGCGUCGUuGG- -5'
14007 5' -49.7 NC_003521.1 + 25988 0.67 0.998535
Target:  5'- gGGCACGGuga--UGAagcCGCAGC-GCCg -3'
miRNA:   3'- aCUGUGCCuaaagACU---GCGUCGuUGG- -5'
14007 5' -49.7 NC_003521.1 + 37410 0.67 0.998535
Target:  5'- -uACACGGGccugaccgUgUGGCGCGGC-GCCg -3'
miRNA:   3'- acUGUGCCUaa------AgACUGCGUCGuUGG- -5'
14007 5' -49.7 NC_003521.1 + 121615 0.67 0.99848
Target:  5'- cUGGCGCucaccacCUGGCGCAGC-GCCa -3'
miRNA:   3'- -ACUGUGccuaaa-GACUGCGUCGuUGG- -5'
14007 5' -49.7 NC_003521.1 + 66869 0.67 0.999327
Target:  5'- gGGCACGGuga-CUGugGCcgaGACCa -3'
miRNA:   3'- aCUGUGCCuaaaGACugCGucgUUGG- -5'
14007 5' -49.7 NC_003521.1 + 86409 0.67 0.998535
Target:  5'- cGACGCGGGg----GACGC-GCGugCc -3'
miRNA:   3'- aCUGUGCCUaaagaCUGCGuCGUugG- -5'
14007 5' -49.7 NC_003521.1 + 42617 0.67 0.998535
Target:  5'- gUGACgguACGGGccgCUGggaacACGuCAGCAGCCg -3'
miRNA:   3'- -ACUG---UGCCUaaaGAC-----UGC-GUCGUUGG- -5'
14007 5' -49.7 NC_003521.1 + 218218 0.67 0.999327
Target:  5'- gGGCaACGGAggUCaggcGAcCGCAGgGGCCg -3'
miRNA:   3'- aCUG-UGCCUaaAGa---CU-GCGUCgUUGG- -5'
14007 5' -49.7 NC_003521.1 + 77483 0.67 0.999327
Target:  5'- aUGAgGCGGGgaUCc--CGCAGCAuACCg -3'
miRNA:   3'- -ACUgUGCCUaaAGacuGCGUCGU-UGG- -5'
14007 5' -49.7 NC_003521.1 + 104096 0.67 0.998996
Target:  5'- gGACGCGGAaggC-GGCGC-GCuGCCa -3'
miRNA:   3'- aCUGUGCCUaaaGaCUGCGuCGuUGG- -5'
14007 5' -49.7 NC_003521.1 + 127963 0.67 0.999176
Target:  5'- aGcCGCGGGagcagCUGGgGCAGCucgGCCa -3'
miRNA:   3'- aCuGUGCCUaaa--GACUgCGUCGu--UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.