miRNA display CGI


Results 101 - 120 of 242 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14007 5' -49.7 NC_003521.1 + 118664 0.67 0.998996
Target:  5'- aGAUGCGGGgucggcUUCggGAgGCGGCGguACCg -3'
miRNA:   3'- aCUGUGCCUa-----AAGa-CUgCGUCGU--UGG- -5'
14007 5' -49.7 NC_003521.1 + 215344 0.67 0.999313
Target:  5'- cGACACcuugggugggugGGAcUUCUcGGCGCAGUAgaggcagaggacgGCCa -3'
miRNA:   3'- aCUGUG------------CCUaAAGA-CUGCGUCGU-------------UGG- -5'
14007 5' -49.7 NC_003521.1 + 44308 0.67 0.998996
Target:  5'- gUGACguACGGGgugCUGAaGCAGguGCUg -3'
miRNA:   3'- -ACUG--UGCCUaaaGACUgCGUCguUGG- -5'
14007 5' -49.7 NC_003521.1 + 60326 0.67 0.998996
Target:  5'- ---gACGGcg--CUGAUGCAGcCGGCCa -3'
miRNA:   3'- acugUGCCuaaaGACUGCGUC-GUUGG- -5'
14007 5' -49.7 NC_003521.1 + 131374 0.67 0.998956
Target:  5'- cGGCAUGGAgUUCgccgaggugacgGGCGuCAGCcugGACCg -3'
miRNA:   3'- aCUGUGCCUaAAGa-----------CUGC-GUCG---UUGG- -5'
14007 5' -49.7 NC_003521.1 + 233003 0.67 0.998784
Target:  5'- cUGGCGcCGGAUggccUUGACGCcguccAGCuGCCg -3'
miRNA:   3'- -ACUGU-GCCUAaa--GACUGCG-----UCGuUGG- -5'
14007 5' -49.7 NC_003521.1 + 191657 0.68 0.996762
Target:  5'- cGuCACGGAUcagccccaGCAGCAGCCg -3'
miRNA:   3'- aCuGUGCCUAaagacug-CGUCGUUGG- -5'
14007 5' -49.7 NC_003521.1 + 109327 0.68 0.996547
Target:  5'- gGGCAgGcGGUUga-GGCgGCAGCAGCCg -3'
miRNA:   3'- aCUGUgC-CUAAagaCUG-CGUCGUUGG- -5'
14007 5' -49.7 NC_003521.1 + 98478 0.68 0.996547
Target:  5'- cGGcCGCGGcgg-CcGugGCGGCGGCCu -3'
miRNA:   3'- aCU-GUGCCuaaaGaCugCGUCGUUGG- -5'
14007 5' -49.7 NC_003521.1 + 186656 0.68 0.998244
Target:  5'- -cGCGCGGcgGUggCgGAgGCGGCGGCCu -3'
miRNA:   3'- acUGUGCC--UAaaGaCUgCGUCGUUGG- -5'
14007 5' -49.7 NC_003521.1 + 211395 0.68 0.998244
Target:  5'- aGGCGcCGGc--UCUcgUGCAGCAGCCg -3'
miRNA:   3'- aCUGU-GCCuaaAGAcuGCGUCGUUGG- -5'
14007 5' -49.7 NC_003521.1 + 221895 0.68 0.998244
Target:  5'- gUGGgGCGGAUUgccgGcGCGCGGC-GCCa -3'
miRNA:   3'- -ACUgUGCCUAAaga-C-UGCGUCGuUGG- -5'
14007 5' -49.7 NC_003521.1 + 110335 0.68 0.998244
Target:  5'- aUGACGCGGccgcgCUcGCGguGUAGCUg -3'
miRNA:   3'- -ACUGUGCCuaaa-GAcUGCguCGUUGG- -5'
14007 5' -49.7 NC_003521.1 + 111500 0.68 0.998244
Target:  5'- cUGACcaGCGGg---CUGGCGgCGGCGGCg -3'
miRNA:   3'- -ACUG--UGCCuaaaGACUGC-GUCGUUGg -5'
14007 5' -49.7 NC_003521.1 + 153133 0.68 0.997905
Target:  5'- -aACACGGGccUCUcgGGCGCcuccacgcucAGCAACCa -3'
miRNA:   3'- acUGUGCCUaaAGA--CUGCG----------UCGUUGG- -5'
14007 5' -49.7 NC_003521.1 + 89736 0.68 0.997063
Target:  5'- gGGCACGGGggcggUGACG--GCAGCCg -3'
miRNA:   3'- aCUGUGCCUaaag-ACUGCguCGUUGG- -5'
14007 5' -49.7 NC_003521.1 + 59963 0.68 0.997905
Target:  5'- cGGCGCGGAacaaaUCcgcGACGuCAGCuACCg -3'
miRNA:   3'- aCUGUGCCUaa---AGa--CUGC-GUCGuUGG- -5'
14007 5' -49.7 NC_003521.1 + 92304 0.68 0.997063
Target:  5'- aGGCGCGGGagga-GGCGCAGCcGCg -3'
miRNA:   3'- aCUGUGCCUaaagaCUGCGUCGuUGg -5'
14007 5' -49.7 NC_003521.1 + 101514 0.68 0.998244
Target:  5'- aGACGCGGccgaccagCaGGCGCuGCAGCUc -3'
miRNA:   3'- aCUGUGCCuaaa----GaCUGCGuCGUUGG- -5'
14007 5' -49.7 NC_003521.1 + 119529 0.68 0.998244
Target:  5'- gGGUACGGGUUg-UGcCGCAGCAccACCu -3'
miRNA:   3'- aCUGUGCCUAAagACuGCGUCGU--UGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.