miRNA display CGI


Results 41 - 60 of 242 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14007 5' -49.7 NC_003521.1 + 131053 0.72 0.972725
Target:  5'- cGGCgGCGGGccUCUggacgcgGugGCGGCGACCg -3'
miRNA:   3'- aCUG-UGCCUaaAGA-------CugCGUCGUUGG- -5'
14007 5' -49.7 NC_003521.1 + 164270 0.71 0.983995
Target:  5'- aGGCGCGGAccgccgcucCUGGacagccaccgcaGCAGCAGCCa -3'
miRNA:   3'- aCUGUGCCUaaa------GACUg-----------CGUCGUUGG- -5'
14007 5' -49.7 NC_003521.1 + 213955 0.71 0.980365
Target:  5'- aGACGCGGGUg---GGCGcCGGCucggGCCg -3'
miRNA:   3'- aCUGUGCCUAaagaCUGC-GUCGu---UGG- -5'
14007 5' -49.7 NC_003521.1 + 119806 0.71 0.984364
Target:  5'- cGGCGCcgccgaGGAggUCUGGaGCAGCGGCUc -3'
miRNA:   3'- aCUGUG------CCUaaAGACUgCGUCGUUGG- -5'
14007 5' -49.7 NC_003521.1 + 192789 0.71 0.9781
Target:  5'- cGGCACGGGcuugcccuugUCgGAUcgcugGCAGCAGCCg -3'
miRNA:   3'- aCUGUGCCUaa--------AGaCUG-----CGUCGUUGG- -5'
14007 5' -49.7 NC_003521.1 + 127194 0.71 0.984364
Target:  5'- cGGcCACGGGg--UUGACGCGGCugAGCUg -3'
miRNA:   3'- aCU-GUGCCUaaaGACUGCGUCG--UUGG- -5'
14007 5' -49.7 NC_003521.1 + 13443 0.71 0.98245
Target:  5'- gGACgACGGAcgUCaaGCGCAGCGGCg -3'
miRNA:   3'- aCUG-UGCCUaaAGacUGCGUCGUUGg -5'
14007 5' -49.7 NC_003521.1 + 180066 0.71 0.984364
Target:  5'- cGGCGgGGA-UUCUccCGCGGCGACUg -3'
miRNA:   3'- aCUGUgCCUaAAGAcuGCGUCGUUGG- -5'
14007 5' -49.7 NC_003521.1 + 99788 0.71 0.984364
Target:  5'- aGGCcCGGGgugucacCUGGCGCAGUAcgGCCu -3'
miRNA:   3'- aCUGuGCCUaaa----GACUGCGUCGU--UGG- -5'
14007 5' -49.7 NC_003521.1 + 93902 0.71 0.975648
Target:  5'- gGGCAUGGGcguggCUGGuCGCGGCAAgCg -3'
miRNA:   3'- aCUGUGCCUaaa--GACU-GCGUCGUUgG- -5'
14007 5' -49.7 NC_003521.1 + 44374 0.71 0.9781
Target:  5'- ---aGCGGAggUUC--GCGCGGCAGCCg -3'
miRNA:   3'- acugUGCCUa-AAGacUGCGUCGUUGG- -5'
14007 5' -49.7 NC_003521.1 + 173517 0.71 0.980147
Target:  5'- aUGACGaugcagaacucguCGGGcgUCaGGCGCAGCGGCUg -3'
miRNA:   3'- -ACUGU-------------GCCUaaAGaCUGCGUCGUUGG- -5'
14007 5' -49.7 NC_003521.1 + 84821 0.71 0.980365
Target:  5'- cGAUACGGGcagCUcGCGCAGC-GCCu -3'
miRNA:   3'- aCUGUGCCUaaaGAcUGCGUCGuUGG- -5'
14007 5' -49.7 NC_003521.1 + 170949 0.71 0.98245
Target:  5'- aUGGcCugGGcgUggcgCUG-CGCGGCGGCCu -3'
miRNA:   3'- -ACU-GugCCuaAa---GACuGCGUCGUUGG- -5'
14007 5' -49.7 NC_003521.1 + 59443 0.71 0.975648
Target:  5'- gGACACGG---UCUGGCGCuacaGGCuguCCg -3'
miRNA:   3'- aCUGUGCCuaaAGACUGCG----UCGuu-GG- -5'
14007 5' -49.7 NC_003521.1 + 174817 0.71 0.98245
Target:  5'- -cACACGGggUUCUccaGCAGCGACUu -3'
miRNA:   3'- acUGUGCCuaAAGAcugCGUCGUUGG- -5'
14007 5' -49.7 NC_003521.1 + 211343 0.71 0.98245
Target:  5'- gGGCGCGaGUggUUGGgguccCGCAGCAGCCg -3'
miRNA:   3'- aCUGUGCcUAaaGACU-----GCGUCGUUGG- -5'
14007 5' -49.7 NC_003521.1 + 65444 0.7 0.989164
Target:  5'- gGuCAUGGGUccccgUCUGAUGCAGgaGACCc -3'
miRNA:   3'- aCuGUGCCUAa----AGACUGCGUCg-UUGG- -5'
14007 5' -49.7 NC_003521.1 + 105946 0.7 0.991204
Target:  5'- cGGCGCGGAUga-UGaccgugugucggguGCGCAGCGugaagaaGCCg -3'
miRNA:   3'- aCUGUGCCUAaagAC--------------UGCGUCGU-------UGG- -5'
14007 5' -49.7 NC_003521.1 + 124196 0.7 0.991663
Target:  5'- cGGCugGGGgugagcgggcccUUUCUGGC-CcGCGACCg -3'
miRNA:   3'- aCUGugCCU------------AAAGACUGcGuCGUUGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.