miRNA display CGI


Results 61 - 80 of 242 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14007 5' -49.7 NC_003521.1 + 116344 0.7 0.991663
Target:  5'- cUGACGCGGAcggaccgCgaGCGCGGCGGCg -3'
miRNA:   3'- -ACUGUGCCUaaa----GacUGCGUCGUUGg -5'
14007 5' -49.7 NC_003521.1 + 63952 0.7 0.986116
Target:  5'- cUGAgCGUGGAgcugCUGGCGCGGC-GCCa -3'
miRNA:   3'- -ACU-GUGCCUaaa-GACUGCGUCGuUGG- -5'
14007 5' -49.7 NC_003521.1 + 65444 0.7 0.989164
Target:  5'- gGuCAUGGGUccccgUCUGAUGCAGgaGACCc -3'
miRNA:   3'- aCuGUGCCUAa----AGACUGCGUCg-UUGG- -5'
14007 5' -49.7 NC_003521.1 + 78523 0.7 0.988743
Target:  5'- cGACGCGGAUUcCgcggacucccggcgUGACGguGCAgagGCUg -3'
miRNA:   3'- aCUGUGCCUAAaG--------------ACUGCguCGU---UGG- -5'
14007 5' -49.7 NC_003521.1 + 84701 0.7 0.991663
Target:  5'- cGACG-GGGUUUCUGACG-GGCGAg- -3'
miRNA:   3'- aCUGUgCCUAAAGACUGCgUCGUUgg -5'
14007 5' -49.7 NC_003521.1 + 119948 0.7 0.986116
Target:  5'- -uGCACGGGcgugaUGACGC-GCGGCCg -3'
miRNA:   3'- acUGUGCCUaaag-ACUGCGuCGUUGG- -5'
14007 5' -49.7 NC_003521.1 + 8742 0.7 0.986116
Target:  5'- gGACGCGGAaaaacgaGACGCGaCAGCCg -3'
miRNA:   3'- aCUGUGCCUaaaga--CUGCGUcGUUGG- -5'
14007 5' -49.7 NC_003521.1 + 69689 0.7 0.987092
Target:  5'- gGugACGGugguccuggugUCgGugGCGGCGGCCc -3'
miRNA:   3'- aCugUGCCuaa--------AGaCugCGUCGUUGG- -5'
14007 5' -49.7 NC_003521.1 + 114032 0.7 0.990478
Target:  5'- -cGCGCGGAg--CUGgaccacGCGCAGC-GCCa -3'
miRNA:   3'- acUGUGCCUaaaGAC------UGCGUCGuUGG- -5'
14007 5' -49.7 NC_003521.1 + 153594 0.7 0.990478
Target:  5'- gGACACGGucaacgUCagcgGGCGgAGCGACUu -3'
miRNA:   3'- aCUGUGCCuaa---AGa---CUGCgUCGUUGG- -5'
14007 5' -49.7 NC_003521.1 + 94411 0.7 0.991663
Target:  5'- -cGCGCaGGU---UGACGCGGCGGCCc -3'
miRNA:   3'- acUGUGcCUAaagACUGCGUCGUUGG- -5'
14007 5' -49.7 NC_003521.1 + 172648 0.7 0.990478
Target:  5'- -cGCACGGAUgacguagguaCUGGCGCAgacGCAGCa -3'
miRNA:   3'- acUGUGCCUAaa--------GACUGCGU---CGUUGg -5'
14007 5' -49.7 NC_003521.1 + 14605 0.7 0.989705
Target:  5'- cGGCACGGugauuaugcggCUGAUgaagaccguGCAGCAGCUg -3'
miRNA:   3'- aCUGUGCCuaaa-------GACUG---------CGUCGUUGG- -5'
14007 5' -49.7 NC_003521.1 + 58705 0.69 0.995958
Target:  5'- cGAgACGGcc--UUGACGCAGCccACCg -3'
miRNA:   3'- aCUgUGCCuaaaGACUGCGUCGu-UGG- -5'
14007 5' -49.7 NC_003521.1 + 179237 0.69 0.996203
Target:  5'- cGcCGCGGGccUUCUGGCGCcugaacucgccggccAGCAGCg -3'
miRNA:   3'- aCuGUGCCUa-AAGACUGCG---------------UCGUUGg -5'
14007 5' -49.7 NC_003521.1 + 30252 0.69 0.995958
Target:  5'- -cGCGCGGuugccgUGGCGCAGCuGACCc -3'
miRNA:   3'- acUGUGCCuaaag-ACUGCGUCG-UUGG- -5'
14007 5' -49.7 NC_003521.1 + 214685 0.69 0.993683
Target:  5'- aGACGCGGAagaccacGACGUugcguuGCAGCCa -3'
miRNA:   3'- aCUGUGCCUaaaga--CUGCGu-----CGUUGG- -5'
14007 5' -49.7 NC_003521.1 + 145697 0.69 0.992729
Target:  5'- cGACGCGGAgcUUUCaagGccacgcucaaGCGCGcGCGGCCg -3'
miRNA:   3'- aCUGUGCCU--AAAGa--C----------UGCGU-CGUUGG- -5'
14007 5' -49.7 NC_003521.1 + 44891 0.69 0.992729
Target:  5'- aGAUccaACGGAUcUCagacGGCGCGGCGGCg -3'
miRNA:   3'- aCUG---UGCCUAaAGa---CUGCGUCGUUGg -5'
14007 5' -49.7 NC_003521.1 + 68532 0.69 0.995958
Target:  5'- cGACAcCGGAc----GGCgGCAGCGGCCg -3'
miRNA:   3'- aCUGU-GCCUaaagaCUG-CGUCGUUGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.