miRNA display CGI


Results 81 - 100 of 242 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14007 5' -49.7 NC_003521.1 + 30252 0.69 0.995958
Target:  5'- -cGCGCGGuugccgUGGCGCAGCuGACCc -3'
miRNA:   3'- acUGUGCCuaaag-ACUGCGUCG-UUGG- -5'
14007 5' -49.7 NC_003521.1 + 68532 0.69 0.995958
Target:  5'- cGACAcCGGAc----GGCgGCAGCGGCCg -3'
miRNA:   3'- aCUGU-GCCUaaagaCUG-CGUCGUUGG- -5'
14007 5' -49.7 NC_003521.1 + 58705 0.69 0.995958
Target:  5'- cGAgACGGcc--UUGACGCAGCccACCg -3'
miRNA:   3'- aCUgUGCCuaaaGACUGCGUCGu-UGG- -5'
14007 5' -49.7 NC_003521.1 + 227862 0.69 0.995218
Target:  5'- aGACugGGAUUcaugaggUCccGACGCGGgAugCg -3'
miRNA:   3'- aCUGugCCUAA-------AGa-CUGCGUCgUugG- -5'
14007 5' -49.7 NC_003521.1 + 84728 0.69 0.994205
Target:  5'- aGACGCGGGcacugccgUCgucgucuugcucgGGCGCGGCGGCg -3'
miRNA:   3'- aCUGUGCCUaa------AGa------------CUGCGUCGUUGg -5'
14007 5' -49.7 NC_003521.1 + 130007 0.69 0.993683
Target:  5'- cUGuuuuCGGGUcUUCUGGCGgAGCAGCUu -3'
miRNA:   3'- -ACugu-GCCUA-AAGACUGCgUCGUUGG- -5'
14007 5' -49.7 NC_003521.1 + 212232 0.69 0.994534
Target:  5'- gGugGCGGu------GCGCAGCAGCCc -3'
miRNA:   3'- aCugUGCCuaaagacUGCGUCGUUGG- -5'
14007 5' -49.7 NC_003521.1 + 68236 0.69 0.99529
Target:  5'- aGGaGCGGuacgUUCaccUGGCGguGCGACCg -3'
miRNA:   3'- aCUgUGCCua--AAG---ACUGCguCGUUGG- -5'
14007 5' -49.7 NC_003521.1 + 49618 0.69 0.995958
Target:  5'- gGACGCGGAg----GACaCGGCGACg -3'
miRNA:   3'- aCUGUGCCUaaagaCUGcGUCGUUGg -5'
14007 5' -49.7 NC_003521.1 + 25807 0.69 0.995958
Target:  5'- cGAgACGGc--UCUGGCGguGCGuuacgagacGCCg -3'
miRNA:   3'- aCUgUGCCuaaAGACUGCguCGU---------UGG- -5'
14007 5' -49.7 NC_003521.1 + 74149 0.69 0.995958
Target:  5'- cGAgACGGGaugCUGuCGCAGCucauCCg -3'
miRNA:   3'- aCUgUGCCUaaaGACuGCGUCGuu--GG- -5'
14007 5' -49.7 NC_003521.1 + 5535 0.69 0.994534
Target:  5'- gGugACGGcag-CcGGCGCGGCcGCCg -3'
miRNA:   3'- aCugUGCCuaaaGaCUGCGUCGuUGG- -5'
14007 5' -49.7 NC_003521.1 + 86263 0.69 0.99529
Target:  5'- -cGCGCuGAggUUCUG-CGCGGCGAUCa -3'
miRNA:   3'- acUGUGcCUa-AAGACuGCGUCGUUGG- -5'
14007 5' -49.7 NC_003521.1 + 151074 0.69 0.994534
Target:  5'- -cGCGCGGGUUUCUGGacCGC--CGACCc -3'
miRNA:   3'- acUGUGCCUAAAGACU--GCGucGUUGG- -5'
14007 5' -49.7 NC_003521.1 + 30839 0.69 0.994534
Target:  5'- gGACGCuGGUggccgUCUGGgccgucCGCGGCAACUu -3'
miRNA:   3'- aCUGUGcCUAa----AGACU------GCGUCGUUGG- -5'
14007 5' -49.7 NC_003521.1 + 103508 0.69 0.994534
Target:  5'- gUGAacuCGGGg-UCgccGCGCAGCAGCCg -3'
miRNA:   3'- -ACUgu-GCCUaaAGac-UGCGUCGUUGG- -5'
14007 5' -49.7 NC_003521.1 + 113954 0.69 0.993772
Target:  5'- cGACACGGAggaggcagacaGACGgcaGGCGGCCg -3'
miRNA:   3'- aCUGUGCCUaaaga------CUGCg--UCGUUGG- -5'
14007 5' -49.7 NC_003521.1 + 214685 0.69 0.993683
Target:  5'- aGACGCGGAagaccacGACGUugcguuGCAGCCa -3'
miRNA:   3'- aCUGUGCCUaaaga--CUGCGu-----CGUUGG- -5'
14007 5' -49.7 NC_003521.1 + 145697 0.69 0.992729
Target:  5'- cGACGCGGAgcUUUCaagGccacgcucaaGCGCGcGCGGCCg -3'
miRNA:   3'- aCUGUGCCU--AAAGa--C----------UGCGU-CGUUGG- -5'
14007 5' -49.7 NC_003521.1 + 44891 0.69 0.992729
Target:  5'- aGAUccaACGGAUcUCagacGGCGCGGCGGCg -3'
miRNA:   3'- aCUG---UGCCUAaAGa---CUGCGUCGUUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.