miRNA display CGI


Results 1 - 20 of 242 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14007 5' -49.7 NC_003521.1 + 189157 1.12 0.012136
Target:  5'- cUGACACGGAUUUCUGACGCAGCAACCc -3'
miRNA:   3'- -ACUGUGCCUAAAGACUGCGUCGUUGG- -5'
14007 5' -49.7 NC_003521.1 + 117357 0.81 0.638279
Target:  5'- gGACACGGAg--CUGACGCc-CAGCCu -3'
miRNA:   3'- aCUGUGCCUaaaGACUGCGucGUUGG- -5'
14007 5' -49.7 NC_003521.1 + 137306 0.8 0.6693
Target:  5'- gUGGCGCGGcug-CUG-CGCGGCGACCc -3'
miRNA:   3'- -ACUGUGCCuaaaGACuGCGUCGUUGG- -5'
14007 5' -49.7 NC_003521.1 + 117308 0.8 0.68984
Target:  5'- cGACGCGGAUUgcgGGCGgCAGCGGCg -3'
miRNA:   3'- aCUGUGCCUAAagaCUGC-GUCGUUGg -5'
14007 5' -49.7 NC_003521.1 + 102967 0.79 0.720259
Target:  5'- gGGCGuCGGGgcUCUGGCGgGGCGGCCc -3'
miRNA:   3'- aCUGU-GCCUaaAGACUGCgUCGUUGG- -5'
14007 5' -49.7 NC_003521.1 + 150842 0.77 0.797265
Target:  5'- cGACGUGGAUUUCUGGCuguuGCAGUuccAGCCg -3'
miRNA:   3'- aCUGUGCCUAAAGACUG----CGUCG---UUGG- -5'
14007 5' -49.7 NC_003521.1 + 77710 0.75 0.893288
Target:  5'- cGugGCGGcgUUgUUGGCGaCGGCGGCCu -3'
miRNA:   3'- aCugUGCCuaAA-GACUGC-GUCGUUGG- -5'
14007 5' -49.7 NC_003521.1 + 88323 0.75 0.893288
Target:  5'- gGAUGCGGGUcUCgccgaaGCGCAGCGACUg -3'
miRNA:   3'- aCUGUGCCUAaAGac----UGCGUCGUUGG- -5'
14007 5' -49.7 NC_003521.1 + 141378 0.75 0.893288
Target:  5'- gUGACGCGGugcccgaUGACGaCAGCAACg -3'
miRNA:   3'- -ACUGUGCCuaaag--ACUGC-GUCGUUGg -5'
14007 5' -49.7 NC_003521.1 + 114774 0.75 0.893959
Target:  5'- gGACACGGAgaccaucuccaugCUGACGUucGGCAGCa -3'
miRNA:   3'- aCUGUGCCUaaa----------GACUGCG--UCGUUGg -5'
14007 5' -49.7 NC_003521.1 + 196248 0.75 0.906266
Target:  5'- cUGGCGCGG-UUUCUGugGUuccGGguACCc -3'
miRNA:   3'- -ACUGUGCCuAAAGACugCG---UCguUGG- -5'
14007 5' -49.7 NC_003521.1 + 26116 0.75 0.906266
Target:  5'- cGACGCGGucUUCUGGCuGCAacGCAACg -3'
miRNA:   3'- aCUGUGCCuaAAGACUG-CGU--CGUUGg -5'
14007 5' -49.7 NC_003521.1 + 18542 0.74 0.912395
Target:  5'- cUGGCACGGGgcUCUGggcaccaucacGCGCGcGCAGCUg -3'
miRNA:   3'- -ACUGUGCCUaaAGAC-----------UGCGU-CGUUGG- -5'
14007 5' -49.7 NC_003521.1 + 31303 0.74 0.918282
Target:  5'- -uGCACGGggUUCUGcgcgagucccuuGCGCAGCAucgcgGCCu -3'
miRNA:   3'- acUGUGCCuaAAGAC------------UGCGUCGU-----UGG- -5'
14007 5' -49.7 NC_003521.1 + 91573 0.74 0.918282
Target:  5'- cGACAUGGccacgUCguaGGCGUAGUAGCCg -3'
miRNA:   3'- aCUGUGCCuaa--AGa--CUGCGUCGUUGG- -5'
14007 5' -49.7 NC_003521.1 + 165262 0.74 0.923924
Target:  5'- gGACA-GGAgggcgCUGGCGUAGCcGCCg -3'
miRNA:   3'- aCUGUgCCUaaa--GACUGCGUCGuUGG- -5'
14007 5' -49.7 NC_003521.1 + 100074 0.74 0.923924
Target:  5'- cGGCACGGAgg-CgGGCGCcuCGACCg -3'
miRNA:   3'- aCUGUGCCUaaaGaCUGCGucGUUGG- -5'
14007 5' -49.7 NC_003521.1 + 210802 0.74 0.934474
Target:  5'- gGACACGGAacagUUCUGuucCGaCAGCGGuCCg -3'
miRNA:   3'- aCUGUGCCUa---AAGACu--GC-GUCGUU-GG- -5'
14007 5' -49.7 NC_003521.1 + 111348 0.74 0.934474
Target:  5'- --cCGCGGAcUUUCUGACGCAcGUgaaAACCa -3'
miRNA:   3'- acuGUGCCU-AAAGACUGCGU-CG---UUGG- -5'
14007 5' -49.7 NC_003521.1 + 191056 0.73 0.939382
Target:  5'- cGACGCucagUUCUGuuccCGCGGCGACCg -3'
miRNA:   3'- aCUGUGccuaAAGACu---GCGUCGUUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.