miRNA display CGI


Results 21 - 40 of 242 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14007 5' -49.7 NC_003521.1 + 139500 0.73 0.939382
Target:  5'- aGACACGuGUUUCUGguGCGCcacGUAGCCg -3'
miRNA:   3'- aCUGUGCcUAAAGAC--UGCGu--CGUUGG- -5'
14007 5' -49.7 NC_003521.1 + 73181 0.73 0.939382
Target:  5'- gGACGCGGAg--CUGGC-CGGCAucgacgugACCg -3'
miRNA:   3'- aCUGUGCCUaaaGACUGcGUCGU--------UGG- -5'
14007 5' -49.7 NC_003521.1 + 198089 0.73 0.939382
Target:  5'- uUGugGgGGGcgUCUGACGguGCuGCCc -3'
miRNA:   3'- -ACugUgCCUaaAGACUGCguCGuUGG- -5'
14007 5' -49.7 NC_003521.1 + 191056 0.73 0.939382
Target:  5'- cGACGCucagUUCUGuuccCGCGGCGACCg -3'
miRNA:   3'- aCUGUGccuaAAGACu---GCGUCGUUGG- -5'
14007 5' -49.7 NC_003521.1 + 16613 0.73 0.948039
Target:  5'- cGACuACGGGcgUcaguaccgcuggcUCUGuCGCGGCGACCg -3'
miRNA:   3'- aCUG-UGCCUa-A-------------AGACuGCGUCGUUGG- -5'
14007 5' -49.7 NC_003521.1 + 130987 0.73 0.948471
Target:  5'- gUGAgCACGGuacccagcCUGACGCGgGCGGCCu -3'
miRNA:   3'- -ACU-GUGCCuaaa----GACUGCGU-CGUUGG- -5'
14007 5' -49.7 NC_003521.1 + 109655 0.73 0.952656
Target:  5'- aGACGCGaGAUgaugCaGACGUAGCGGCg -3'
miRNA:   3'- aCUGUGC-CUAaa--GaCUGCGUCGUUGg -5'
14007 5' -49.7 NC_003521.1 + 224436 0.73 0.952656
Target:  5'- gGACGCGGAcacaUGAaggggaGCAGCAGCUu -3'
miRNA:   3'- aCUGUGCCUaaagACUg-----CGUCGUUGG- -5'
14007 5' -49.7 NC_003521.1 + 202733 0.73 0.952656
Target:  5'- uUGACGCGGcagg--GGCGCGGgGACCc -3'
miRNA:   3'- -ACUGUGCCuaaagaCUGCGUCgUUGG- -5'
14007 5' -49.7 NC_003521.1 + 108335 0.73 0.952656
Target:  5'- -uGCACGGGUcUCUGG-GCcGCAACCu -3'
miRNA:   3'- acUGUGCCUAaAGACUgCGuCGUUGG- -5'
14007 5' -49.7 NC_003521.1 + 115539 0.73 0.956607
Target:  5'- cGACGCGGcucgcCUGACGgAGC-GCCg -3'
miRNA:   3'- aCUGUGCCuaaa-GACUGCgUCGuUGG- -5'
14007 5' -49.7 NC_003521.1 + 43478 0.72 0.960327
Target:  5'- -aGCGCGGcggccgugCUGGcCGCGGCGGCCa -3'
miRNA:   3'- acUGUGCCuaaa----GACU-GCGUCGUUGG- -5'
14007 5' -49.7 NC_003521.1 + 210029 0.72 0.967094
Target:  5'- gGACACGGAgcUCUGcACaCGGUAACg -3'
miRNA:   3'- aCUGUGCCUaaAGAC-UGcGUCGUUGg -5'
14007 5' -49.7 NC_003521.1 + 193155 0.72 0.967094
Target:  5'- aUGGCGgGGGcgUCUGcugcugcuguuGCGCAGCuGCCg -3'
miRNA:   3'- -ACUGUgCCUaaAGAC-----------UGCGUCGuUGG- -5'
14007 5' -49.7 NC_003521.1 + 120019 0.72 0.967094
Target:  5'- gGACuCGGAcaUC-GACaGCAGCAACCc -3'
miRNA:   3'- aCUGuGCCUaaAGaCUG-CGUCGUUGG- -5'
14007 5' -49.7 NC_003521.1 + 230408 0.72 0.970152
Target:  5'- cGACACGcGGUUUUUGagauGCGgGGCGACg -3'
miRNA:   3'- aCUGUGC-CUAAAGAC----UGCgUCGUUGg -5'
14007 5' -49.7 NC_003521.1 + 172350 0.72 0.970152
Target:  5'- gGGCgGCGGG-UUCUGACGCAGaaagucgaugcUGACCg -3'
miRNA:   3'- aCUG-UGCCUaAAGACUGCGUC-----------GUUGG- -5'
14007 5' -49.7 NC_003521.1 + 13856 0.72 0.970152
Target:  5'- cGGCGCGGGggucUCUGcGgGCGGCGccGCCa -3'
miRNA:   3'- aCUGUGCCUaa--AGAC-UgCGUCGU--UGG- -5'
14007 5' -49.7 NC_003521.1 + 163193 0.72 0.970152
Target:  5'- gGACACGGug----GugGCGGCGGCa -3'
miRNA:   3'- aCUGUGCCuaaagaCugCGUCGUUGg -5'
14007 5' -49.7 NC_003521.1 + 131053 0.72 0.972725
Target:  5'- cGGCgGCGGGccUCUggacgcgGugGCGGCGACCg -3'
miRNA:   3'- aCUG-UGCCUaaAGA-------CugCGUCGUUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.