miRNA display CGI


Results 61 - 80 of 242 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14007 5' -49.7 NC_003521.1 + 69689 0.7 0.987092
Target:  5'- gGugACGGugguccuggugUCgGugGCGGCGGCCc -3'
miRNA:   3'- aCugUGCCuaa--------AGaCugCGUCGUUGG- -5'
14007 5' -49.7 NC_003521.1 + 78523 0.7 0.988743
Target:  5'- cGACGCGGAUUcCgcggacucccggcgUGACGguGCAgagGCUg -3'
miRNA:   3'- aCUGUGCCUAAaG--------------ACUGCguCGU---UGG- -5'
14007 5' -49.7 NC_003521.1 + 65444 0.7 0.989164
Target:  5'- gGuCAUGGGUccccgUCUGAUGCAGgaGACCc -3'
miRNA:   3'- aCuGUGCCUAa----AGACUGCGUCg-UUGG- -5'
14007 5' -49.7 NC_003521.1 + 217108 0.7 0.989164
Target:  5'- cGACAUGGGUUg--GACGUAGauGCCc -3'
miRNA:   3'- aCUGUGCCUAAagaCUGCGUCguUGG- -5'
14007 5' -49.7 NC_003521.1 + 14605 0.7 0.989705
Target:  5'- cGGCACGGugauuaugcggCUGAUgaagaccguGCAGCAGCUg -3'
miRNA:   3'- aCUGUGCCuaaa-------GACUG---------CGUCGUUGG- -5'
14007 5' -49.7 NC_003521.1 + 153594 0.7 0.990478
Target:  5'- gGACACGGucaacgUCagcgGGCGgAGCGACUu -3'
miRNA:   3'- aCUGUGCCuaa---AGa---CUGCgUCGUUGG- -5'
14007 5' -49.7 NC_003521.1 + 172648 0.7 0.990478
Target:  5'- -cGCACGGAUgacguagguaCUGGCGCAgacGCAGCa -3'
miRNA:   3'- acUGUGCCUAaa--------GACUGCGU---CGUUGg -5'
14007 5' -49.7 NC_003521.1 + 114032 0.7 0.990478
Target:  5'- -cGCGCGGAg--CUGgaccacGCGCAGC-GCCa -3'
miRNA:   3'- acUGUGCCUaaaGAC------UGCGUCGuUGG- -5'
14007 5' -49.7 NC_003521.1 + 105946 0.7 0.991204
Target:  5'- cGGCGCGGAUga-UGaccgugugucggguGCGCAGCGugaagaaGCCg -3'
miRNA:   3'- aCUGUGCCUAaagAC--------------UGCGUCGU-------UGG- -5'
14007 5' -49.7 NC_003521.1 + 124196 0.7 0.991663
Target:  5'- cGGCugGGGgugagcgggcccUUUCUGGC-CcGCGACCg -3'
miRNA:   3'- aCUGugCCU------------AAAGACUGcGuCGUUGG- -5'
14007 5' -49.7 NC_003521.1 + 94411 0.7 0.991663
Target:  5'- -cGCGCaGGU---UGACGCGGCGGCCc -3'
miRNA:   3'- acUGUGcCUAaagACUGCGUCGUUGG- -5'
14007 5' -49.7 NC_003521.1 + 116344 0.7 0.991663
Target:  5'- cUGACGCGGAcggaccgCgaGCGCGGCGGCg -3'
miRNA:   3'- -ACUGUGCCUaaa----GacUGCGUCGUUGg -5'
14007 5' -49.7 NC_003521.1 + 84701 0.7 0.991663
Target:  5'- cGACG-GGGUUUCUGACG-GGCGAg- -3'
miRNA:   3'- aCUGUgCCUAAAGACUGCgUCGUUgg -5'
14007 5' -49.7 NC_003521.1 + 44891 0.69 0.992729
Target:  5'- aGAUccaACGGAUcUCagacGGCGCGGCGGCg -3'
miRNA:   3'- aCUG---UGCCUAaAGa---CUGCGUCGUUGg -5'
14007 5' -49.7 NC_003521.1 + 76312 0.69 0.992729
Target:  5'- cGGCAgCGGAg----GugGCGGCGACa -3'
miRNA:   3'- aCUGU-GCCUaaagaCugCGUCGUUGg -5'
14007 5' -49.7 NC_003521.1 + 155615 0.69 0.992729
Target:  5'- cGGCGCGGcgccgggUGACGCAgugucguacGCGACCg -3'
miRNA:   3'- aCUGUGCCuaaag--ACUGCGU---------CGUUGG- -5'
14007 5' -49.7 NC_003521.1 + 145697 0.69 0.992729
Target:  5'- cGACGCGGAgcUUUCaagGccacgcucaaGCGCGcGCGGCCg -3'
miRNA:   3'- aCUGUGCCU--AAAGa--C----------UGCGU-CGUUGG- -5'
14007 5' -49.7 NC_003521.1 + 130007 0.69 0.993683
Target:  5'- cUGuuuuCGGGUcUUCUGGCGgAGCAGCUu -3'
miRNA:   3'- -ACugu-GCCUA-AAGACUGCgUCGUUGG- -5'
14007 5' -49.7 NC_003521.1 + 214685 0.69 0.993683
Target:  5'- aGACGCGGAagaccacGACGUugcguuGCAGCCa -3'
miRNA:   3'- aCUGUGCCUaaaga--CUGCGu-----CGUUGG- -5'
14007 5' -49.7 NC_003521.1 + 113954 0.69 0.993772
Target:  5'- cGACACGGAggaggcagacaGACGgcaGGCGGCCg -3'
miRNA:   3'- aCUGUGCCUaaaga------CUGCg--UCGUUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.