miRNA display CGI


Results 81 - 100 of 242 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14007 5' -49.7 NC_003521.1 + 84728 0.69 0.994205
Target:  5'- aGACGCGGGcacugccgUCgucgucuugcucgGGCGCGGCGGCg -3'
miRNA:   3'- aCUGUGCCUaa------AGa------------CUGCGUCGUUGg -5'
14007 5' -49.7 NC_003521.1 + 212232 0.69 0.994534
Target:  5'- gGugGCGGu------GCGCAGCAGCCc -3'
miRNA:   3'- aCugUGCCuaaagacUGCGUCGUUGG- -5'
14007 5' -49.7 NC_003521.1 + 103508 0.69 0.994534
Target:  5'- gUGAacuCGGGg-UCgccGCGCAGCAGCCg -3'
miRNA:   3'- -ACUgu-GCCUaaAGac-UGCGUCGUUGG- -5'
14007 5' -49.7 NC_003521.1 + 30839 0.69 0.994534
Target:  5'- gGACGCuGGUggccgUCUGGgccgucCGCGGCAACUu -3'
miRNA:   3'- aCUGUGcCUAa----AGACU------GCGUCGUUGG- -5'
14007 5' -49.7 NC_003521.1 + 131105 0.69 0.994534
Target:  5'- gGACgGCGGGg--C-GGCGCGGCuGCCg -3'
miRNA:   3'- aCUG-UGCCUaaaGaCUGCGUCGuUGG- -5'
14007 5' -49.7 NC_003521.1 + 64590 0.69 0.994534
Target:  5'- cGACAUGGugaagcggCUGGCGCGGgacgacacgcuuCGGCCg -3'
miRNA:   3'- aCUGUGCCuaaa----GACUGCGUC------------GUUGG- -5'
14007 5' -49.7 NC_003521.1 + 5535 0.69 0.994534
Target:  5'- gGugACGGcag-CcGGCGCGGCcGCCg -3'
miRNA:   3'- aCugUGCCuaaaGaCUGCGUCGuUGG- -5'
14007 5' -49.7 NC_003521.1 + 151074 0.69 0.994534
Target:  5'- -cGCGCGGGUUUCUGGacCGC--CGACCc -3'
miRNA:   3'- acUGUGCCUAAAGACU--GCGucGUUGG- -5'
14007 5' -49.7 NC_003521.1 + 30545 0.69 0.994534
Target:  5'- gGGCACGGuacg--GACGCGcCGGCCa -3'
miRNA:   3'- aCUGUGCCuaaagaCUGCGUcGUUGG- -5'
14007 5' -49.7 NC_003521.1 + 227862 0.69 0.995218
Target:  5'- aGACugGGAUUcaugaggUCccGACGCGGgAugCg -3'
miRNA:   3'- aCUGugCCUAA-------AGa-CUGCGUCgUugG- -5'
14007 5' -49.7 NC_003521.1 + 68236 0.69 0.99529
Target:  5'- aGGaGCGGuacgUUCaccUGGCGguGCGACCg -3'
miRNA:   3'- aCUgUGCCua--AAG---ACUGCguCGUUGG- -5'
14007 5' -49.7 NC_003521.1 + 86263 0.69 0.99529
Target:  5'- -cGCGCuGAggUUCUG-CGCGGCGAUCa -3'
miRNA:   3'- acUGUGcCUa-AAGACuGCGUCGUUGG- -5'
14007 5' -49.7 NC_003521.1 + 58705 0.69 0.995958
Target:  5'- cGAgACGGcc--UUGACGCAGCccACCg -3'
miRNA:   3'- aCUgUGCCuaaaGACUGCGUCGu-UGG- -5'
14007 5' -49.7 NC_003521.1 + 68532 0.69 0.995958
Target:  5'- cGACAcCGGAc----GGCgGCAGCGGCCg -3'
miRNA:   3'- aCUGU-GCCUaaagaCUG-CGUCGUUGG- -5'
14007 5' -49.7 NC_003521.1 + 30252 0.69 0.995958
Target:  5'- -cGCGCGGuugccgUGGCGCAGCuGACCc -3'
miRNA:   3'- acUGUGCCuaaag-ACUGCGUCG-UUGG- -5'
14007 5' -49.7 NC_003521.1 + 49618 0.69 0.995958
Target:  5'- gGACGCGGAg----GACaCGGCGACg -3'
miRNA:   3'- aCUGUGCCUaaagaCUGcGUCGUUGg -5'
14007 5' -49.7 NC_003521.1 + 25807 0.69 0.995958
Target:  5'- cGAgACGGc--UCUGGCGguGCGuuacgagacGCCg -3'
miRNA:   3'- aCUgUGCCuaaAGACUGCguCGU---------UGG- -5'
14007 5' -49.7 NC_003521.1 + 74149 0.69 0.995958
Target:  5'- cGAgACGGGaugCUGuCGCAGCucauCCg -3'
miRNA:   3'- aCUgUGCCUaaaGACuGCGUCGuu--GG- -5'
14007 5' -49.7 NC_003521.1 + 113869 0.69 0.995958
Target:  5'- cGGCGCGGGUUc----CGCGGCGGCa -3'
miRNA:   3'- aCUGUGCCUAAagacuGCGUCGUUGg -5'
14007 5' -49.7 NC_003521.1 + 179237 0.69 0.996203
Target:  5'- cGcCGCGGGccUUCUGGCGCcugaacucgccggccAGCAGCg -3'
miRNA:   3'- aCuGUGCCUa-AAGACUGCG---------------UCGUUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.