miRNA display CGI


Results 101 - 120 of 242 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14007 5' -49.7 NC_003521.1 + 92103 0.69 0.996203
Target:  5'- gGGCACGGAggccUCgagGAUGCcguaccagcugagguGGCAGCUg -3'
miRNA:   3'- aCUGUGCCUaa--AGa--CUGCG---------------UCGUUGG- -5'
14007 5' -49.7 NC_003521.1 + 225566 0.68 0.99632
Target:  5'- aGACGgGGAcccgugucgucCUGGCGCucGGCGGCCu -3'
miRNA:   3'- aCUGUgCCUaaa--------GACUGCG--UCGUUGG- -5'
14007 5' -49.7 NC_003521.1 + 66509 0.68 0.996378
Target:  5'- gGGC-UGGAUUUCaaGGCGCAGCuggacaagaucgccGACCu -3'
miRNA:   3'- aCUGuGCCUAAAGa-CUGCGUCG--------------UUGG- -5'
14007 5' -49.7 NC_003521.1 + 98478 0.68 0.996547
Target:  5'- cGGcCGCGGcgg-CcGugGCGGCGGCCu -3'
miRNA:   3'- aCU-GUGCCuaaaGaCugCGUCGUUGG- -5'
14007 5' -49.7 NC_003521.1 + 4611 0.68 0.996547
Target:  5'- aGuCACGGuggUUUGACGUAGCAu-- -3'
miRNA:   3'- aCuGUGCCuaaAGACUGCGUCGUugg -5'
14007 5' -49.7 NC_003521.1 + 109327 0.68 0.996547
Target:  5'- gGGCAgGcGGUUga-GGCgGCAGCAGCCg -3'
miRNA:   3'- aCUGUgC-CUAAagaCUG-CGUCGUUGG- -5'
14007 5' -49.7 NC_003521.1 + 13671 0.68 0.996547
Target:  5'- aGGCuCGGAgagg-GugGCGGCGACg -3'
miRNA:   3'- aCUGuGCCUaaagaCugCGUCGUUGg -5'
14007 5' -49.7 NC_003521.1 + 169541 0.68 0.996547
Target:  5'- uUGAgAUGGAagagaaaCUGcCGCAGCAGCUc -3'
miRNA:   3'- -ACUgUGCCUaaa----GACuGCGUCGUUGG- -5'
14007 5' -49.7 NC_003521.1 + 191657 0.68 0.996762
Target:  5'- cGuCACGGAUcagccccaGCAGCAGCCg -3'
miRNA:   3'- aCuGUGCCUAaagacug-CGUCGUUGG- -5'
14007 5' -49.7 NC_003521.1 + 92304 0.68 0.997063
Target:  5'- aGGCGCGGGagga-GGCGCAGCcGCg -3'
miRNA:   3'- aCUGUGCCUaaagaCUGCGUCGuUGg -5'
14007 5' -49.7 NC_003521.1 + 89736 0.68 0.997063
Target:  5'- gGGCACGGGggcggUGACG--GCAGCCg -3'
miRNA:   3'- aCUGUGCCUaaag-ACUGCguCGUUGG- -5'
14007 5' -49.7 NC_003521.1 + 91858 0.68 0.997063
Target:  5'- aGcACGCGGAUga-UGGCGCugcccuccAGCAGCa -3'
miRNA:   3'- aC-UGUGCCUAaagACUGCG--------UCGUUGg -5'
14007 5' -49.7 NC_003521.1 + 49889 0.68 0.997063
Target:  5'- cGugGCGugcgUgUGGCGaCGGCAGCCa -3'
miRNA:   3'- aCugUGCcuaaAgACUGC-GUCGUUGG- -5'
14007 5' -49.7 NC_003521.1 + 101482 0.68 0.997063
Target:  5'- gUGGCGCGuGAggugCUcGAgcaGCGGCGGCCa -3'
miRNA:   3'- -ACUGUGC-CUaaa-GA-CUg--CGUCGUUGG- -5'
14007 5' -49.7 NC_003521.1 + 136941 0.68 0.997063
Target:  5'- gUGACugGGAguucCUGGCaC-GCGACCu -3'
miRNA:   3'- -ACUGugCCUaaa-GACUGcGuCGUUGG- -5'
14007 5' -49.7 NC_003521.1 + 216126 0.68 0.997471
Target:  5'- cGGCGCGGAg----GcCGCGGCAgaggaagGCCa -3'
miRNA:   3'- aCUGUGCCUaaagaCuGCGUCGU-------UGG- -5'
14007 5' -49.7 NC_003521.1 + 50734 0.68 0.997514
Target:  5'- aGGCAUGucg-UC-GGCGCAGCAGCg -3'
miRNA:   3'- aCUGUGCcuaaAGaCUGCGUCGUUGg -5'
14007 5' -49.7 NC_003521.1 + 172386 0.68 0.997514
Target:  5'- cGGCACGcGGUUgaggGGCGCcGGCGgaGCCg -3'
miRNA:   3'- aCUGUGC-CUAAaga-CUGCG-UCGU--UGG- -5'
14007 5' -49.7 NC_003521.1 + 148552 0.68 0.997514
Target:  5'- gGACGCGG---UUUGaACGCGucgacGCGACCg -3'
miRNA:   3'- aCUGUGCCuaaAGAC-UGCGU-----CGUUGG- -5'
14007 5' -49.7 NC_003521.1 + 95211 0.68 0.997514
Target:  5'- cGGCAcCGGGUgc--GACuGCAGCAGCg -3'
miRNA:   3'- aCUGU-GCCUAaagaCUG-CGUCGUUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.